Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1234 ATGGCGACGTACTTTCATGGAAGCACTTCGGAGATTCAATCTTCTGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCGTCTTACGTACCTTATGCTGACGCGCCGCACCACCCAACACTTCTCGTCAATCCCAACGCTACCAACGCGCTCAACCTCGCGAGTCTCACCCACGCGCCTCCGGTATCACCTGCCGCCAACCACCACCAGCAAGTTATTCACGGCGTGTCAAACGTCCTTGGATCCGGAAATTCCGATGAACACGCTCACACCCGACAGTCTTTGTTCGGGGAAAATATCGCCGCCTTCCACGGCTTCTCCGGCGGAGCCTCCTCCACCGCCCCTCGCGTTCCCTATAACCTCTGGGGTTCGGGGGTTGATCAACCTGGAACGCCTTCTAGCAGTTCAGGCGGCGGCGGCGGTTTCCGGCGGCCCAGTCAGCAGGGGTTGTCTCTCAGCCTTTCCTCACAGCAAACAAACTTCAGGTCAGTTTCTGGCGAGCTTGAGATTGCCGGACAGGGCCATGTCGCCGGAACTGGGAACTCGCCGACATCGGCTGCGTCGACAGGAGTTTCCGGCCTGATTTTGGGGTCGAAGTATCTGAAAGCGACGCAGGAGCTTCTGGATGAAGTTGTTAACGTAGGAAAAGGAATCTACAAAGATGAAAAGTTCTCAGAGAAGGTGAAAGCGAATAAAGAATCTACAAATTCTGGTGCTGGTGCTGGTTCAAGTGGTGGAGGCGAAAACAGTGCAGGGAAGCAAATGGTTGAACTCAGCACCGCCCAGAGGCAAGAACTTCAGATGAAGAAGTCCAAGCTCGTCAACATGCTGGATGAGGTGGAACAAAGGTACAGGCAATATCACCACCAAATGCAAATTGTGGTATCATCATTTGAGCAAGCTGCGGGTTATGGGGCGGCAAAATCTTACACTGCCCTTGCCCTAAAGACTATCTCAAAGCAATTCCGGTGCCTGAAAGATGCAATCTCTGCACAAATCAAAGCCACGAGCAAGACATTGGGTGAAGATGATTGCTTAGGAGTGAAAGTAGAAGGGTCAAGGCTTAGGTATGTTGATCACCATCTTAGGCAACAAAGGGCACTGCAGCAGCTAGGAATGATTCAACCCAATGCATGGAGACCACAAAGAGGCCTTCCAGAACGAGCCGTTTCCATTCTTCGAGCTTGGCTTTTTGAGCATTTTCTTCACCCCTATCCAAAGGACTCAGATAAAGCCATGCTTGCTAAACAAACTGGACTGGCTAGAAGCCAGGTGTCAAACTGGTTTATCAATGCCCGGGTTCGGCTGTGGAAGCCAATGGTTGAAGAAATGTACCTGGAAGAAATGAAGGATCATGAACAAGCGAACGGCTCAGAAAACAGCAGATCAAAAGAGTTGAGCAAGGAATTGGGGTCAACAGCAAATGTTGCACCAGAATCAGGAGCCATTAAACTAGATAATCTTCAATCAAAACAAGATAGCTTCAACAACCAAAACACTTCTCCAAATGAAATCTCAACAAATTCTTCAATGTCTCCCATCGGAGGGTCCCTTCAATCCCACTCTGGTTTCCATCTTGCAGGATCATCTGACGTGCAAAGGAGTCCAAACAAACCAAGAAGTTTGGAAATGCAAAATTCTCCAAGTAGTATCCTCTCAGTGGACATGGAAATGAAGCATAATGGTGAACATGCAAATACTAGAGAAGCCAACACAAAGTTTAGCATTGAAAGGCACCACAAAGATGGATACCCTTTGATGAGTGGCAATACAAACCAAGGTGGGGGTTTTGGAGCGTTCGCCATGGAAGACATTGGAAACAGATTCAACGTCACTACTGAGCAACTGGCTTCAAGGTTCCATGGAAATGGTGTTTCTCTCACACTAGGTCTTCCCCACAATGAAAACCTTTCTATCTCAGGAACTCAGCATGGATTTCTCTCACAGAATATTCATCTGGGAAGGAGACTTGAGATGGGAACGACTGGGAATGAATTTTGTGCTATCAACACTCCACCTTCATCCCACTCAGGAACAACTTATGAGAGCATTGATATTCAAAACAGAAAGAGGAAGAATCAGAAACACTCTGAAGCATGGCAGGTTGGCAATTGGAGGAGAAAGTGA 2127 0.4824 MATYFHGSTSEIQSSADGLQTLYLMNPSYVPYADAPHHPTLLVNPNATNALNLASLTHAPPVSPAANHHQQVIHGVSNVLGSGNSDEHAHTRQSLFGENIAAFHGFSGGASSTAPRVPYNLWGSGVDQPGTPSSSSGGGGGFRRPSQQGLSLSLSSQQTNFRSVSGELEIAGQGHVAGTGNSPTSAASTGVSGLILGSKYLKATQELLDEVVNVGKGIYKDEKFSEKVKANKESTNSGAGAGSSGGGENSAGKQMVELSTAQRQELQMKKSKLVNMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKAMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQANGSENSRSKELSKELGSTANVAPESGAIKLDNLQSKQDSFNNQNTSPNEISTNSSMSPIGGSLQSHSGFHLAGSSDVQRSPNKPRSLEMQNSPSSILSVDMEMKHNGEHANTREANTKFSIERHHKDGYPLMSGNTNQGGGFGAFAMEDIGNRFNVTTEQLASRFHGNGVSLTLGLPHNENLSISGTQHGFLSQNIHLGRRLEMGTTGNEFCAINTPPSSHSGTTYESIDIQNRKRKNQKHSEAWQVGNWRRK* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1234 708 MobiDBLite consensus disorder prediction 492 546 - -
Pvu5g1234 708 Pfam Associated with HOX 195 330 IPR006563 -
Pvu5g1234 708 MobiDBLite consensus disorder prediction 230 254 - -
Pvu5g1234 708 MobiDBLite consensus disorder prediction 126 158 - -
Pvu5g1234 708 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 652 - -
Pvu5g1234 708 MobiDBLite consensus disorder prediction 451 466 - -
Pvu5g1234 708 MobiDBLite consensus disorder prediction 686 708 - -
Pvu5g1234 708 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677|GO:0006355
Pvu5g1234 708 MobiDBLite consensus disorder prediction 121 158 - -
Pvu5g1234 708 MobiDBLite consensus disorder prediction 451 478 - -
Pvu5g1234 708 Gene3D - 382 461 - -
Pvu5g1234 708 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 652 - -
Pvu5g1234 708 SMART prehox3 189 331 IPR006563 -
Pvu5g1234 708 SMART HOX_1 379 443 IPR001356 GO:0003677
Pvu5g1234 708 Coils Coil 263 290 - -
Pvu5g1234 708 CDD homeodomain 379 440 IPR001356 GO:0003677
Pvu5g1234 708 MobiDBLite consensus disorder prediction 231 254 - -
Pvu5g1234 708 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677
Pvu5g1234 708 SUPERFAMILY Homeodomain-like 380 446 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1234 Pvu-Chr5 34059341 34065625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1234 1 691 Homeobox Transcription Factor Family AT2G35940 44.130 1.53e-135 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu5g1234 POX 4.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1234 - - gmx:100779075 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1234 5 34059341 34065625 Pvu5g1234 5 34059341 34065625 ECH
Pvu5g1234 5 34059341 34065625 Pvu11g1021 11 10563091 10568229 PCT