Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1233 ATGACAGAAATTGAAATTCCTCAGTTTTTTGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACAACTGTTACGGGCATAACCTACGACAGAGAAAGCATAGAATACTGGTTGCTCAAAGCTAAAAATTGCACGTGTCCAATCACACAGCAACCATTGCCGCGAAACTCAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCGAATGAAGCAAACGGTGTTGATCAGATTCCGACACCGAAGTCCCCTCTTAGCAATGCCAACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCCACGCTTTCAAAACGCAATCGAGAAGTTGCATGACCTTGCAGTAGAGAACGAGAGGAACAGAAGGTGTATGGCTTCAGCGGGTGTAGCAGAAGCTATGGTGCAAGTGATCACAAAGAGTTTCACGCAGGACAAAACGTCGTCGTGCATTGAGGAGGCTCTGAGGATTCTTCGTTTGCTTTGGAGCAGTGCCAATGTGATGGACAGTAACTACATGAAGCGCTTGCTGGGTCAGAACTTTGACTTTCTGAACTCGTTGACTCGGGTTTTGCAGCTTCAAACTAAGAACAACGTTAAGGTAATAAATGAAGCAATGCCTATATTGAAATTGACAATTGAAGCCAAAGATTCAACCCCTTTAGGGAACTTAGGGCTTGAATTCTTCAGAGTGGTTGTGAAGGTGATGAAAAATAGAGAACTCTCTCAGCAAGCTATTAAATCGGCATTGTATGTGCTCATAGAAACGTGTCCTTTGGGGAGGAATAGAACGAAGATAGTTGATGCAGGTGCCGTGGAGGAGCTCGTTGAACTTGCACTTGAAAACCCAGAAAAGAATCTAACAGAACTCGTATTCATCCTTTTGGCGCATCTGTGTTCATGTGCTGATGGGAGAGACCAGTTTCTGCAGCATGCTGCAAGCATTGCTGTGGTTTCCAAAAGGATCCTTAGGGTTTCTCCAACCATCGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAGTTCTCAGCGTCTCATGAAGTAGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGCTACAAGCAGATAGTGCTTCCTATTTGAAAGAAAAGGCAAGAAGTGTACTTAGGTTACACTCCAAAACATGGAATAATTCTCCCTGCATTCAAGTATATTTGTTTACCAGATTCCAAAGGTGA 1242 0.4436 MTEIEIPQFFACPISLQIMKDPVTTVTGITYDRESIEYWLLKAKNCTCPITQQPLPRNSEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNANVEKLVKDLEVPPRFQNAIEKLHDLAVENERNRRCMASAGVAEAMVQVITKSFTQDKTSSCIEEALRILRLLWSSANVMDSNYMKRLLGQNFDFLNSLTRVLQLQTKNNVKVINEAMPILKLTIEAKDSTPLGNLGLEFFRVVVKVMKNRELSQQAIKSALYVLIETCPLGRNRTKIVDAGAVEELVELALENPEKNLTELVFILLAHLCSCADGRDQFLQHAASIAVVSKRILRVSPTIDDRALHIFSLISKFSASHEVVQEMLRVGAVSKLCMVLQADSASYLKEKARSVLRLHSKTWNNSPCIQVYLFTRFQR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1233 413 PANTHER WDSAM1 PROTEIN 3 411 IPR045185 GO:0061630
Pvu5g1233 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Pvu5g1233 413 SUPERFAMILY RING/U-box 3 84 - -
Pvu5g1233 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Pvu5g1233 413 Gene3D - 101 401 IPR011989 -
Pvu5g1233 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Pvu5g1233 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 411 - -
Pvu5g1233 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Pvu5g1233 413 CDD RING-Ubox_PUB 10 53 IPR045210 -
Pvu5g1233 413 SUPERFAMILY ARM repeat 113 392 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1233 Pvu-Chr5 34052659 34054048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1233 3 403 U-box Gene Family AT2G35930 40.494 6.45e-103 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1233 - - gmx:100778547 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1233 5 34052659 34054048 Pvu11g1023 11 10596863 10598095 PCT