Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1232 ATGGATGAAGTTGAAATTCCTGCTCATTTTCTCTGCCCCATTTCCCTCCAACTCATGAGAGACCCTGTCACTGTTTGCACAGGAATCACTTATGATAGGGAGAACATAGAGAAATGGTTGTTTTCATGCAAGAACAACACATGCCCCGTTACCAAGCAGAGCCTACTAGACCATGATCTCACCCCAAACCACACTCTACGCAGGCTGATCCAATCTTGGTGCACCCTCAATGCCTCACTTGGAGTTGAGCGCATTCCAACTCCAAAGTCACCCATTGACAGAACTCAGATTGTGAAACTCCTCGCAGAAGCAAAGAGGTTCCCAGAGAAGCAACTCAAATGTCTCACAAGGCTTCGATCCATTGCCTTTGAGGGTCAAAGGAACAAGACCTGTTTGGAGTCTGCAGGAGTTGTTGAATTCTTAGCCTCAACCATGAAGCACAAGACAGAAGAAAACTCAACTGTTCTTCTCTGTGAAGCAGCCATCGAAGTCTTATTCCACCTTAACCCTTCCGAGGCTCAGCTTAAAGCTCTCATATATAACGAGGGGTTTCAGTTTATTGAGTCATTGTTCCACGTGTTGAGGCTTGGAAACTACCAATCTAGAGCTTATGCAACCATGCTGCTTAGATCAGCATTGGAGGTTGCTGATCCTATCCAACTGATCAGTGTCAAAACAGTGCTGTTTGTGGAAATCTTGCGCGTGCTGCGTGATCAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTGATTGTGGAGCTCTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCGGTCCTCATTGAGCTACTTCTTTGTACCTCTGAAAGAAGAACATGTGAACTCATTTTAATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGCTGCAGGATTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCTCGTGGCAAGTGATAGAGGGGTTAGAATTTTTGCCTCCATTTGTAGGTATTCCGCCAATGCCAGAGTGCTTCATGAAATGTTGCAGGTTGGTGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTGAATTGCGGTTTCAAGACTAGAGAGAGGGCCAAGGAGATACTCAAATTGCATTCCTCAGTTTGGAAGAATTCTCCATGTATTCCTGTGCCTTTGTTGTCTTCCTTTCCTTGA 1212 0.4579 MDEVEIPAHFLCPISLQLMRDPVTVCTGITYDRENIEKWLFSCKNNTCPVTKQSLLDHDLTPNHTLRRLIQSWCTLNASLGVERIPTPKSPIDRTQIVKLLAEAKRFPEKQLKCLTRLRSIAFEGQRNKTCLESAGVVEFLASTMKHKTEENSTVLLCEAAIEVLFHLNPSEAQLKALIYNEGFQFIESLFHVLRLGNYQSRAYATMLLRSALEVADPIQLISVKTVLFVEILRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLCTSERRTCELILIALDQLCGCAEGRAELLNHAAGLAIVSKKILRVSLVASDRGVRIFASICRYSANARVLHEMLQVGAVSKLCLVLQVNCGFKTRERAKEILKLHSSVWKNSPCIPVPLLSSFP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1232 403 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Pvu5g1232 403 Gene3D - 95 323 IPR011989 -
Pvu5g1232 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Pvu5g1232 403 PANTHER OS11G0573500 PROTEIN 1 403 - -
Pvu5g1232 403 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Pvu5g1232 403 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Pvu5g1232 403 PANTHER WDSAM1 PROTEIN 1 403 IPR045185 GO:0061630
Pvu5g1232 403 SUPERFAMILY ARM repeat 98 308 IPR016024 -
Pvu5g1232 403 SUPERFAMILY RING/U-box 3 77 - -
Pvu5g1232 403 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1232 Pvu-Chr5 34036412 34037898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1232 2 403 U-box Gene Family AT2G35930 55.665 1.90e-163 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1232 - - gmx:100778012 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1232 5 34036412 34037898 Pvu5g1232 5 34036412 34037898 ECH
Pvu5g1232 5 34036412 34037898 Pvu11g1024 11 10634130 10635635 PCT