Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1222 ATGTTTGGGAGAGCGCCCAAGAAAAGCGACAGTACCAGGTACTATGAAATTCTTGGCGTCGCTAAGAATGCGTCGCCGGAGGATTTGAAAAAGGCTTATAAGAAAGCCGCCATAAAAAATCACCCCGACAAAGGTGGTGATCCCGAGAAGTTCAAAGAGCTTGCTCAAGCCTATGAGGTTCTGAGTGACGCTGAGAAACGTGAGATTTACGATACTTACGGTGAAGATGCTCTTAAGGAGGGAATGAGTGGTGGCGGTGGTGGCCATGACCCGTTTGATATCTTCAGTTCGTTCTTTGGTGGAAATCCGTTTGGTGGAGGTGGTAGCAGTAGAGGAAGGAGGCAGAGACGGGGAGAAGATGTGGTTCACCCTCTAAAGGTCTCTTTGGAGGACCTTTACCTTGGAACTTCTAAGAAACTCTCTCTTTCACGAAATGTGTTGTGCTCAAAATGCAATGGGAAGGGTTCAAAGTCCGGGGCTTCAATGACTTGTGCTGGTTGCCAGGGTTCTGGTATGAAGTTGTCCATTAGGCATCTTGGTCCTTCTATGATTCAGCAAATGCAACATCCTTGCAATGAGTGCAAGGGCACTGGAGAGACTATCAGTGACAGAGACCGATGCACTCAGTGCAAGGGAGAAAAGGTTGTTCAGGACAAGAAAGTACTTGAAGTTGTTGTGGAGAAGGGAATGCAAAATGCGCAGAAGATTACATTCCCTGGGGAAGCTGATGAAGCACCTGATACAATCACTGGGGATATTGTATTTGTCCTGCAACAGAAGGAACATCCAAAGTTCAAAAGAAAGATTGAAGACCTTTTTGTTGAGCATACTTTGTCTCTCACTGAGGCTCTATGTGGCTTCCAGTTTGTGCTGACTCACTTGGATGGTCGACAACTCCTTATCAAATCAAACCCTGGGGAGGTTGTCAAGCCTGATTCTTACAAGGCTATTAACGATGAGGGAATGCCTATGTACCAGAGGCCCTTCATGAAGGGGAAGCTTTACATTCATTTTACCGTGGAATTTCCTGATTCTCTGAGCCCTGATCAGGTGACGGCCATAGAGGCTGTTTTGCCAGCGAAAACTTCACCACAAAAGTTGACAGAAATGGAGCTAGACGAGTGTGAGGAGACTACACTTCATGGTGTGAACATGGAGGAAGAGTTAAGGAGGAGGCAACAAATTCCGCAGGAGGCATACGAGGAGGATGACGACATGCATGGCGGTGCTCAGAGAGTACAGTGCGCTCAGCAGTAA 1257 0.471 MFGRAPKKSDSTRYYEILGVAKNASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDAEKREIYDTYGEDALKEGMSGGGGGHDPFDIFSSFFGGNPFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMTCAGCQGSGMKLSIRHLGPSMIQQMQHPCNECKGTGETISDRDRCTQCKGEKVVQDKKVLEVVVEKGMQNAQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKIEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLSPDQVTAIEAVLPAKTSPQKLTEMELDECEETTLHGVNMEEELRRRQQIPQEAYEEDDDMHGGAQRVQCAQQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1222 418 PRINTS DnaJ domain signature 15 33 IPR001623 -
Pvu5g1222 418 PRINTS DnaJ domain signature 46 66 IPR001623 -
Pvu5g1222 418 PRINTS DnaJ domain signature 66 85 IPR001623 -
Pvu5g1222 418 Gene3D DnaJ domain 10 109 IPR036869 -
Pvu5g1222 418 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Pvu5g1222 418 SMART dnaj_3 12 66 IPR001623 -
Pvu5g1222 418 CDD DnaJ 14 63 IPR001623 -
Pvu5g1222 418 Pfam DnaJ domain 14 71 IPR001623 -
Pvu5g1222 418 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 418 IPR044713 GO:0006457|GO:0030544
Pvu5g1222 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Pvu5g1222 418 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Pvu5g1222 418 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 7 418 - -
Pvu5g1222 418 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Pvu5g1222 418 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Pvu5g1222 418 Gene3D - 110 260 - -
Pvu5g1222 418 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Pvu5g1222 418 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Pvu5g1222 418 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Pvu5g1222 418 Gene3D - 148 214 - -
Pvu5g1222 418 MobiDBLite consensus disorder prediction 380 418 - -
Pvu5g1222 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 353 IPR008971 GO:0006457|GO:0051082
Pvu5g1222 418 Hamap Chaperone protein DnaJ [dnaJ]. 10 370 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pvu5g1222 418 MobiDBLite consensus disorder prediction 380 409 - -
Pvu5g1222 418 CDD DnaJ_C 119 346 - -
Pvu5g1222 418 Gene3D - 262 344 - -
Pvu5g1222 418 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1222 Pvu-Chr5 33932467 33934778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1222 14 73 C2H2 Transcription Factor Family AT1G74250 40.580 4.52e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1222 K09503 - gmx:100778677 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1222 5 33932467 33934778 Pvu5g1222 5 33932467 33934778 ECH
Pvu5g1222 5 33932467 33934778 Pvu11g1030 11 10798426 10801334 PCT