Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1217 ATGTCAATGGACATGATGGCAGCCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACAGTTAGATGTGGACACTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCACTTCAACCTTTTCCTTCTCAAGAAACTCAGCATTTTTCTACCGTTGCTAAGTTACAGAGACAGCACCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTGGGATCATCATCAAAATGCAAATCATTTGAGTCCGACCATGAGCAACCAAGGATTCCTCCCATTCGTCCTCCAGAGAAGAGACAGCGTGTTCCTTCTGCTTATAATCGGTTCATTAAAGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAAGCTTTTAGCACGGCTGCGAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGAGATGGTACTCAAAAGTCTAACGGATTTTACTGA 558 0.4373 MSMDMMAAERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQETQHFSTVAKLQRQHLSVQEACSKELGSSSKCKSFESDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1217 185 Pfam YABBY protein 7 162 IPR006780 GO:0007275
Pvu5g1217 185 MobiDBLite consensus disorder prediction 94 111 - -
Pvu5g1217 185 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 185 - -
Pvu5g1217 185 PANTHER PROTEIN YABBY 6-RELATED 3 185 IPR006780 GO:0007275
Pvu5g1217 185 MobiDBLite consensus disorder prediction 94 117 - -
Pvu5g1217 185 Gene3D High mobility group box domain 98 158 IPR036910 -
Pvu5g1217 185 SUPERFAMILY HMG-box 107 155 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1217 Pvu-Chr5 33854923 33864003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1217 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 64.767 1.00e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pvu5g1217 YABBY 6.4e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1217 K25796 - gmx:100785458 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1217 5 33854923 33864003 Pvu11g1033 11 10846106 10852521 PCT