Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1215 ATGGAGGGTGCTGGGATGGAGGGGAATGATATCAATGATGACGGTAATAAGTCTGAGGCGCATTTGACTTCCGCCGCTGCTTTTGTTGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGTAGCATATGCCTCGAAGCCTTCTGTGACAGTGATCCTTCCACGGTTACCAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTCGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGAAACTTTAGGATCAATCCACCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATAATCCAACACTTGGCTGCTGCAGCAGCAATGGGAAGAGCACGCCACATTGCTAGAAGGGAAGGTCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACACTTTTTAGTTTTTTCGACTCATCCTAATTCACCTCCCATGGCTCCTACTTCTTCCTCTCCATCTCAGAGGGGAGATGATGAACCAACTCCTACAATTGCTGTTTCCAATCTGTCTCCAACTCCTGCAACGGGAGACCAATCATCACAAGTGACTTTAGTTGCTCCTGTTCAAGCAGACCAGGTTTCTGCTCTTGGTACAGATCATCAGGGATCATCTTACAGCAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGGCCATCAGAATTCCAGTCATTTTCAGAGTCTCTGAAATCGAAACTGAATGCTGTGTCAACAAGATACAAGGAGTCAATTTCCAAGAGTACAAAAGGGTGGAAGGAGAGATGGTTTTCTCGTAACAATGCTATGTCTGATATTGGATCTGATGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCGCGCATGATGGAACGTCTGGAGACCAGAGACAGTATTAGAAGCAATAGTAATTCAGCTCCAAGTAATTTAGAGGATGGTTCAGTTCAAGCACCTAATGATCAACCTTTAGCTGGCACTGAAGGGGGCAGTCTTTTGGGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGTTCTAGTTCGAATTAA 1173 0.4535 MEGAGMEGNDINDDGNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRINPPRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPTSSSPSQRGDDEPTPTIAVSNLSPTPATGDQSSQVTLVAPVQADQVSALGTDHQGSSYSNRRSPNQSSPSSQDRAGPSEFQSFSESLKSKLNAVSTRYKESISKSTKGWKERWFSRNNAMSDIGSDVRREVNAGIATVSRMMERLETRDSIRSNSNSAPSNLEDGSVQAPNDQPLAGTEGGSLLGDNNTKASCAAGSSSN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1215 390 SUPERFAMILY RING/U-box 34 89 - -
Pvu5g1215 390 MobiDBLite consensus disorder prediction 157 223 - -
Pvu5g1215 390 MobiDBLite consensus disorder prediction 372 390 - -
Pvu5g1215 390 MobiDBLite consensus disorder prediction 336 390 - -
Pvu5g1215 390 Pfam Ring finger domain 40 81 IPR001841 -
Pvu5g1215 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 10 390 - -
Pvu5g1215 390 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Pvu5g1215 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 90 IPR013083 -
Pvu5g1215 390 MobiDBLite consensus disorder prediction 184 223 - -
Pvu5g1215 390 MobiDBLite consensus disorder prediction 240 274 - -
Pvu5g1215 390 SMART ring_2 41 81 IPR001841 -
Pvu5g1215 390 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 10 390 - -
Pvu5g1215 390 MobiDBLite consensus disorder prediction 341 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1215 Pvu-Chr5 33818636 33822931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1215 38 89 C3H Transcription Factor Family AT5G15790 42.308 4.95e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1215 K19043 - gmx:100814908 681.019