LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu5g1199	ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCCCCACAAACCAGTAGTTCTCAACTCTTTCCCTGAAGACAGCAATACCATCAACAACAGCAGTAGCCAACACAAGTGGAAACTTGGTCCCAACATGGATGTCACAGTTACCAGAAACAGGTCTCCATCATCTTCTCCAAACACAAACACCAACACCACCTCCACCATCCCCTTCCAAGTCAACCATACCTCTGATAACAAAAGGCCCCACATCGATGAGATGGACTTCTTCCCTAACAAAACCGATGATGATCATAACAAAGGTATAAACAACTTTGCCTCTGCCTCCACCTCCGCACCTCCCTCACTTGACCACCTTGTTCACACACATGATCATTCATCCACTCCTGCTATCTTGGAATTGAAAGTAAACACTGGTTTGAATCTTCTCACCACCAACACTGGTAGTGATCATTCCATGGTGGACGATGAGGCATCCACTAATTCAGAAGAAAAAAGAGCCAAGAGTGAGATGGTTGTTCTTCAAGCTGAGCTTGAGAAAATGAAGGTGGAGAATCATAGGCTGAGGAACATGCTTGATCAGGTTAACACCAGCTACAATGCCTTGCAGATGCATTTGGTGAGTTTGATGCAAGAACAAAAGGAGGAGGAGGGTGAGCAAAAAGTGTTTGATGGAAAATTAGATGAGGAAAAACAAAGTGGGAATGGAGCCTTGGTGCCAAGACAATTTATGGATCTTGGGTTGGCTAGTAATGCTGATAATAATGAACCTTCCCATTCTTCCTCGGTGGGAAGAAGTCAGGATCTGTCAAAGTCGCCAATAAATAATGAGGTAGCATCCAAAGAATTTGACACCAAGAAGAATGGGAGTGTTAGTGATGAAGGACTTGATCAAGACAAGAAGGAATTTGTAAGGGGAATTGAAAGAGAAGACAGTCCTTCAGAAGGGATTGCCGCTAATAGCAATGTTCCAAAGTTTAGTCCTCCAAGGAACGTTGATCAAGCTGAAGCTACCATGAGAAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCAATGATCACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAACGATACTGATCACAACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCAGCCATGGCAATGGCACAAACCACTTCCTCAGCAGCTAGAATGCTGCTTTCAGGATCCATGTCAAGTGCTGATGGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTCCCTTGCTCTTCTAGCATGGCCACTATCTCAGCATCAGCTCCATTCCCAACTGTTACATTGGATTTGACTCAGTCTCCAAATCCACTACAGTTCCCAAAGCCCCCAAACCAATTCCAAATCCCCTTTCCTGGTGTCCCTCAGAACTTTGCCAATTCCTCAGCCTCATTGCTGCCTCAGATATTCGGCCAGGCACTGTATAACCAGTCCAAGTTTTCTGGCCTCCAAATGTCTCAAGATGCAGACCCTTCCCCACTGAGTAATCAATCTCAACGGCCACCACCACACCTTGCTGACACGGTTAGTGCTGCCACTGCTGCCATTGCAGCTGACCCCAACTTCACAGCAGCTTTGGCAGCAGCAATCACTTCTATTATTGGGGGTGCACAGCCAAACAACAGTACCAGTACCAATAATAATGGCACCACATCCAACAACACCAACAATGCCAATGTTACATCAAACAACAACAAATAA	1854	0.4601	MARGGGLSIDSDPIGSFFPHKPVVLNSFPEDSNTINNSSSQHKWKLGPNMDVTVTRNRSPSSSPNTNTNTTSTIPFQVNHTSDNKRPHIDEMDFFPNKTDDDHNKGINNFASASTSAPPSLDHLVHTHDHSSTPAILELKVNTGLNLLTTNTGSDHSMVDDEASTNSEEKRAKSEMVVLQAELEKMKVENHRLRNMLDQVNTSYNALQMHLVSLMQEQKEEEGEQKVFDGKLDEEKQSGNGALVPRQFMDLGLASNADNNEPSHSSSVGRSQDLSKSPINNEVASKEFDTKKNGSVSDEGLDQDKKEFVRGIEREDSPSEGIAANSNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPNQFQIPFPGVPQNFANSSASLLPQIFGQALYNQSKFSGLQMSQDADPSPLSNQSQRPPPHLADTVSAATAAIAADPNFTAALAAAITSIIGGAQPNNSTSTNNNGTTSNNTNNANVTSNNNK*	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu5g1199	617	PANTHER	OS05G0567200 PROTEIN	71	610	-	-
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	253	284	-	-
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	152	173	-	-
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	534	555	-	-
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	216	236	-	-
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	216	241	-	-
	Pvu5g1199	617	Pfam	WRKY DNA -binding domain	362	419	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu5g1199	617	Coils	Coil	169	203	-	-
	Pvu5g1199	617	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	71	610	IPR044810	GO:0003700
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	587	617	-	-
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	534	558	-	-
	Pvu5g1199	617	ProSiteProfiles	WRKY domain profile.	355	421	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	54	82	-	-
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	285	317	-	-
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	54	88	-	-
	Pvu5g1199	617	Gene3D	WRKY domain	345	422	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu5g1199	617	MobiDBLite	consensus disorder prediction	253	336	-	-
	Pvu5g1199	617	SUPERFAMILY	WRKY DNA-binding domain	353	421	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu5g1199	617	SMART	WRKY_cls	360	420	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu5g1199	Pvu-Chr5	33530600	33533721	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu5g1199	141	599	WRKY Transcription Factor Family	AT1G62300	54.430	2.09e-136	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pvu5g1199		WRKY	3.3e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu5g1199	-		-	gmx:100127384	851.277

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu5g1199	5	33530600	33533721	Pvu6g1538	6	26094790	26097688	ECH
	Pvu5g1199	5	33530600	33533721	Pvu5g1199	5	33530600	33533721	ECH
	Pvu5g1199	5	33530600	33533721	Pvu11g1607	11	40925274	40928159	ECH
	Pvu5g1199	5	33530600	33533721	Pvu11g1049	11	11097802	11100927	PCT