Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1198 ATGGAGTGGACCAGAGGCTTCATCATAGGACGTGGCTCATCAGCCACCGTCTACACCGCCACCTCCGCCCACTCCTCCACTGTTTCCGCCGTCAAGACTGCAGAGTTATCACCATCAAACTCAGAAAAGCTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCACATAGTTACCTACAAAGGTTGTAACACCACAGAGGAAAGCAACACCCTATGGTTCAACCTCTACATGGAGTACATGCCCTTTGGAACTCTCTCGCAGGAAATTCATCGGCAAGGTGGCCGGCTCAGCGCGCCGACCATCGTGCACTACGTTCGACAAGTCCTGCAGGGGCTGGAGTACTTGCATAATAAGGGTGTTGTGCATTGTGATATTAAAGGTAGCAACATTTTGATTGGAGAAGATGGAGCAAAGATTGGGGATTTTGGATGTGCAAAGTTGTTGAACGAGTCTCCGGTGGCGGCGATCGGAGGCACGCCAATGTTCATGGCTCCAGAGGTGGCGCGTGGGGAGGAGCAGGGGTACCCTGCTGATATATGGGCGCTTGGGTGCACTGTGGTTGAAATGGCTACTGGGTTTGCGCCGTGGCCTAATTTAGAAGACCCTGTCACTGTGCTGTACCGTGTTGCATATTCCAATGAGGTTCCTGAGATTCCAAGCTTTCTGTCTGAAGAGGCAAAGGATTTCTTGGGGAAGTGTTTTAGGAGGAATCCTAAAGAGAGATGGAGTTGTAGTGAGCTTCTGAAGCATCCGTTTCTCGGGGAATTCAGTTCCAATGATAAGGAAATTCAGCAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGGGCTTTTGGAATTCTGTGGAAGAGGCAGAGTCAGAGGCAGGGTGTGCCTCTGAGCCTGGCAATGTGGTTCAGATTAGAAGTTCGGATGAGTCTCCCAAGGGTAGGATCAGAAGGCTAGCTTTGTGTTCAGAGGATCCAATTTGGGAGTTGGGTGATGAAAATTGGATCACAACTAGGGGTAGTGAAGCAGCAGGGGCTTCAACTTGTGAAGGGTTGGATTTTGATGTTAATATTAGAATTAGTGATTATTTTTGTGATGATTATTATAAATGTAGTGATGTTAGCGTTGTAGTTGATAGTTTCAATTTTGAGGGAGGCATAGGTGAGATGGTTCTCCCTTCAACATTTGAGTTTTTATAA 1200 0.4733 MEWTRGFIIGRGSSATVYTATSAHSSTVSAVKTAELSPSNSEKLQREQRILSSLFSPHIVTYKGCNTTEESNTLWFNLYMEYMPFGTLSQEIHRQGGRLSAPTIVHYVRQVLQGLEYLHNKGVVHCDIKGSNILIGEDGAKIGDFGCAKLLNESPVAAIGGTPMFMAPEVARGEEQGYPADIWALGCTVVEMATGFAPWPNLEDPVTVLYRVAYSNEVPEIPSFLSEEAKDFLGKCFRRNPKERWSCSELLKHPFLGEFSSNDKEIQQSNSCSPTSILEQGFWNSVEEAESEAGCASEPGNVVQIRSSDESPKGRIRRLALCSEDPIWELGDENWITTRGSEAAGASTCEGLDFDVNIRISDYFCDDYYKCSDVSVVVDSFNFEGGIGEMVLPSTFEFL* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1198 399 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 356 - -
Pvu5g1198 399 SUPERFAMILY Protein kinase-like (PK-like) 4 286 IPR011009 -
Pvu5g1198 399 CDD STKc_MAPKKK 2 256 - -
Pvu5g1198 399 PANTHER MAP KINASE KINASE KINASE 1 356 - -
Pvu5g1198 399 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Pvu5g1198 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Pvu5g1198 399 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
Pvu5g1198 399 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1198 399 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1198 399 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1198 Pvu-Chr5 33511213 33512412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1198 1 286 MAP Kinase Kinase Kinase AT2G32510 54.545 5.39e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pvu5g1198 Pkinase 4.8e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1198 K20716 - pvu:PHAVU_005G115900g 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1198 5 33511213 33512412 Pvu6g1540 6 26114743 26116104 ECH
Pvu5g1198 5 33511213 33512412 Pvu5g1198 5 33511213 33512412 ECH
Pvu5g1198 5 33511213 33512412 Pvu3g0839 3 12972232 12973601 ECH
Pvu5g1198 5 33511213 33512412 Pvu11g1050 11 11135969 11137311 PCT