Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1196 ATGGAGCTTCGTTCTCGTCGACGCCTTTCCAATACCACAGCAGTTTCTGCTACTCTCAATTCGTCAGGGAATGAGCAGCAACCTAAGGATGATGCTGTTGAGGAAGATGAAACTAAGGGCCAGTGCAGCAACAATAAAGACAAAGGTGTATCTGTTATGTATTCTGATTCGGATATGGTTTCTGGTTCTGATTCCGGTTCCGATTATGAAGATGAAGAATTGGATGGGAGCTACCTGCCGGACTTGAATGCATATGTATATCCACTTTCAAGCGGCAGTGTTTCTGGTGGAGAAGATTCTGATTCTGATTCATCTGATGGTGACAAAGCTTCATCCAAAAAGGTGACGGTGTCCAGAGAGAGAAGAAAGAGTATCAACACAGCAAAAGGGGAACCGAGTGATGTGGTTAAGGTGGAGGATCATGAGTATTCAATGATTCCACCAGTATTGGTTCCATCTTCTTTTAAGGGAACTAAGAAGAGGAAATATACAAGAAAAGGAACTAAAGGAGATTCTCGTCCAGTGTTGTTGTGGAATGCATGGGAAGAAGAGCAAGAGAAATGGATTGATCAGCATATATTAGAAGATGTTGACTTAGATAATCAGAGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTAAGATACCAGAGGGAATGGTTAGCTTGGGCTTTGAAACAAGAACATTCTTTGAGTAGAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCAAGACATTTGTGAACCAGATCAATCCATACCATGTTCATCTAGCCTGTCTGCAATTAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTTACTCAGTGGGTCAGTGAGATTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCTAATAGAGGGAGGAGTGGGGATCGGTTTGCAGATTATGATTTTGTGATAACTACATACTCTGTTGTTGAGAATGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCGAGTAAGTTGATGTATCATCAAAACTATTTTTGTGGACCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAGAAAAGAGAAGTTACTAAAGGGAAGACCAAGGAATGCGACAGTAGAAAGATTTTGAAGGGTTCTATCAAGGAAAAGGGAGACAAAATGGGCATAGATATGGAAGATTCTGATGCTGTACCTGTGCGTAGCGATAAGTCATTTCTCCATGCTGTGAAATGGCAAAGGATCATATTGGATGAGGCACACTATATCAAATCTAGACACTGTAACACTGCTAAAGCAGTTCTTGCTTTAGATTCTACCTACAAATGGGCGTTGAGTGGGACTCCCCTTCAGAACCGAGTTGGGGAGCTGTATTCTCTGATAAGATTCCTGCAGATAACTCCTTATTCTTATTACTTGTGCAAGGACTGTGACTGCAGGATTCTTGATCACAGCTCTAAAGAATGTTCAGTCTGCACTCACAGTTCTGTGCGACATTTCTGTTGGTGGAATAAATACGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGGAAAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATCGTACTAAGGCGCACAAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCTTTGAGAAAGGATTGCCTGGATATTAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAATTTAATACATACATTGAAGCAAATACTCTGATGCATAATTATGCTCATATATTTGACCTCCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTGGTGGTATATTCTCAAAGTTCTAGTTCAAGAAGTGCAGTTATGGCCAATAACGCTACTACTGTTGAGCAAATTTGTGGTATTTGCCATGAGCCTATAGAAGACCTTGTTGTTACCTCCTGTGAGCATTCATTTTGCCGGGCATGCTTGATAGACTACTACTCTACTTCCTTGGGCCAAGTATCATGCCCTGCGTGCTCTAAATTACTTACAGTTGATTTAACACCCAACAAGGATGTCGGAGATCAGGCTAAAACAACAATTAAGGGTTTCAGATCCTCAAGCATTTTGAATAGAATTCACCTTGAGAACTTTCAGACGAGCACTAAAACAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAAACTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGACTGCTAGGGATGCTGCCATTCGGAGATTCACTGAAGATCCAGATTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCCGTAGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGAATTGTGAGGTTTGTCATCGAGAACACAATCGAGGAGAGAATTCTGAAACTCCAAGAGAAGAAAGAACTCGTGTTTGAAGGGACTATAGGTGGGTCTTCTGATGCTCTGGGGAAATTAACAGAGGCAGACTTGAGATTTTTGTTTGTCACCTAA 2784 0.4142 MELRSRRRLSNTTAVSATLNSSGNEQQPKDDAVEEDETKGQCSNNKDKGVSVMYSDSDMVSGSDSGSDYEDEELDGSYLPDLNAYVYPLSSGSVSGGEDSDSDSSDGDKASSKKVTVSRERRKSINTAKGEPSDVVKVEDHEYSMIPPVLVPSSFKGTKKRKYTRKGTKGDSRPVLLWNAWEEEQEKWIDQHILEDVDLDNQSEVMNETAEAPSDLTMPLLRYQREWLAWALKQEHSLSRGGILADEMGMGKTIQAIALVLAKREFQDICEPDQSIPCSSSLSAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGANRGRSGDRFADYDFVITTYSVVENEYRKHMMPPKERCPYCGKLFLPSKLMYHQNYFCGPDAVRTEKQSKQAKKKREVTKGKTKECDSRKILKGSIKEKGDKMGIDMEDSDAVPVRSDKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTYIEANTLMHNYAHIFDLLTRLRQAVDHPYLVVYSQSSSSRSAVMANNATTVEQICGICHEPIEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPACSKLLTVDLTPNKDVGDQAKTTIKGFRSSSILNRIHLENFQTSTKTEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLTARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1196 927 CDD SF2_C_SNF 755 882 - -
Pvu5g1196 927 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 502 IPR014001 -
Pvu5g1196 927 Pfam Helicase conserved C-terminal domain 769 871 IPR001650 -
Pvu5g1196 927 MobiDBLite consensus disorder prediction 8 27 - -
Pvu5g1196 927 ProSitePatterns Zinc finger RING-type signature. 688 697 IPR017907 -
Pvu5g1196 927 Gene3D - 381 594 IPR038718 -
Pvu5g1196 927 ProSiteProfiles Zinc finger RING-type profile. 673 714 IPR001841 -
Pvu5g1196 927 MobiDBLite consensus disorder prediction 28 43 - -
Pvu5g1196 927 SMART helicmild6 788 871 IPR001650 -
Pvu5g1196 927 PANTHER BNAA08G28190D PROTEIN 104 924 - -
Pvu5g1196 927 MobiDBLite consensus disorder prediction 44 64 - -
Pvu5g1196 927 Gene3D - 222 357 IPR038718 -
Pvu5g1196 927 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 760 917 IPR001650 -
Pvu5g1196 927 SMART ultradead3 216 507 IPR014001 -
Pvu5g1196 927 SMART ring_2 673 713 IPR001841 -
Pvu5g1196 927 MobiDBLite consensus disorder prediction 102 132 - -
Pvu5g1196 927 CDD DEXDc_SHPRH-like 220 517 - -
Pvu5g1196 927 Pfam Zinc finger, C3HC4 type (RING finger) 673 713 IPR018957 GO:0046872
Pvu5g1196 927 SUPERFAMILY RING/U-box 668 718 - -
Pvu5g1196 927 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 741 IPR013083 -
Pvu5g1196 927 Gene3D - 596 925 IPR027417 -
Pvu5g1196 927 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 104 924 - -
Pvu5g1196 927 MobiDBLite consensus disorder prediction 1 132 - -
Pvu5g1196 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 925 IPR027417 -
Pvu5g1196 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 574 IPR027417 -
Pvu5g1196 927 Pfam SNF2-related domain 235 649 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1196 Pvu-Chr5 33498352 33505304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1196 146 927 RAD5 or RAD16-like Gene Family AT1G05120 66.206 0.0 1067
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu5g1196 SNF2_N 3.8e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1196 K15083 - gmx:100798333 1485.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1196 5 33498352 33505304 Pvu5g1196 5 33498352 33505304 ECH