Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1194 ATGGCGAGAACAGTCTCCAACAACGACAGCACCAACGATGAAACAGGCGACGACAGCAATGCTACAACGAAGGACGAGAGCGATGTCAAAGGTCGCGTGAGGAAGGGGCCGTGGACACCAGCAGAAGACGCGATCCTTGTAGAGTACGTGAAGAAGCATGGCGAAGGGAATTGGAACTCCGTGCACAAAAATTCTGGGTTGTTCAGGTGCGGCAAAAGTTGCAGACTTCGCTGGGCCAACCACCTCAGGCCTAATCTCAAGAAAGGTGCATTCTCTCCTGAGGAAGAACAAGTCATCATCGACCTTCATTCCAAGCTCGGAAACAAATGGGCCCGAATGGCCGCACAGTTACCTGGCAGGACCGACAATGAAATAAAGAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTGCCCATTTATCCTCCTGAGGTGCATGTAGAAGCCACTGCATACCATCTACAACACCGCTACTTGGAACACCAACCTCATTCATCTGCATCATTTGCTTTACTCCTATCTTCTTGTTACCCCAAGAAGCTCAATGACCCTAGCCAATCCAATAATTCCAATCCGAATCAGCTGCAAAACCAACCTGATTCTTCCAACTGTTACATTAATCCAAGCCAGAAGCACTTCAAGTTTTCCAATGAAAATGGTGGAAATTCAAATCTTGCTTTGCCATTGTCCCCTCTTTCTCCGTATGGATCATCCTCCTCCACCCTTCTTAACCACAGTTTTGGTGATCATGGCTTCATAGCAGGATCCCCGTATGAACCCTTTCCTTTGGTGCCAGGCTCCACCCCTGACATCTCTTCCAACCAAACACCAACCCCTGCTTCATCCTATGCTAGTGGTGTCGATGGCCTGATGGGATCTTCAAGCATGGTTAATAATAATAGTAATAATAATAATGACTACTATGAAGTTGCACCATTGTCTCCTCCAGGAAACAGTGGCCTGCTGGATGCTCTAGTGATGGAGGCTCAAGGTCTTTCTCACAATGGCAAGTCCAAGAATGAGGAGGATCCAACCCTTTCTGGGAAGCTATCTTGTAAGAGAAAGAACTTGGAATATGCAGAGGAGGGAGGCACTCCGCCTATGGTGTCAGCCATGAAGAAGAACAGTAGCAATAGTACTACTACTGAAAACCAGAGGGATGATGATAACAGCTCCTCCCAATGGTCAAAAGGGAAGAAAGTGATGGGGGAGGATCCAATGGAAGAGATGAACTCGATGGACGATGACTTGTTTAGTCTGCTGAACCAGTTTCCCTTAGAAATGCCAATGCCTGAGTGGTACCGAAGAGGAGAAAGTCAGTCATTGGGACTTGAAAACCAGACCAATGCTTCACCACCTGACCCCGCTGATCAAGAGTATGCTTGGACTCTCGGAACTTGCTGGAACAACATGCCCAGCATATGCTAA 1437 0.476 MARTVSNNDSTNDETGDDSNATTKDESDVKGRVRKGPWTPAEDAILVEYVKKHGEGNWNSVHKNSGLFRCGKSCRLRWANHLRPNLKKGAFSPEEEQVIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPIYPPEVHVEATAYHLQHRYLEHQPHSSASFALLLSSCYPKKLNDPSQSNNSNPNQLQNQPDSSNCYINPSQKHFKFSNENGGNSNLALPLSPLSPYGSSSSTLLNHSFGDHGFIAGSPYEPFPLVPGSTPDISSNQTPTPASSYASGVDGLMGSSSMVNNNSNNNNDYYEVAPLSPPGNSGLLDALVMEAQGLSHNGKSKNEEDPTLSGKLSCKRKNLEYAEEGGTPPMVSAMKKNSSNSTTTENQRDDDNSSSQWSKGKKVMGEDPMEEMNSMDDDLFSLLNQFPLEMPMPEWYRRGESQSLGLENQTNASPPDPADQEYAWTLGTCWNNMPSIC* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1194 478 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Pvu5g1194 478 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Pvu5g1194 478 Gene3D - 35 87 - -
Pvu5g1194 478 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 450 - -
Pvu5g1194 478 MobiDBLite consensus disorder prediction 18 36 - -
Pvu5g1194 478 Gene3D - 90 136 - -
Pvu5g1194 478 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Pvu5g1194 478 MobiDBLite consensus disorder prediction 363 414 - -
Pvu5g1194 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Pvu5g1194 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Pvu5g1194 478 MobiDBLite consensus disorder prediction 373 401 - -
Pvu5g1194 478 MobiDBLite consensus disorder prediction 185 222 - -
Pvu5g1194 478 Pfam Myb-like DNA-binding domain 38 97 - -
Pvu5g1194 478 MobiDBLite consensus disorder prediction 1 36 - -
Pvu5g1194 478 MobiDBLite consensus disorder prediction 1 17 - -
Pvu5g1194 478 CDD SANT 37 82 IPR001005 -
Pvu5g1194 478 CDD SANT 90 131 IPR001005 -
Pvu5g1194 478 SMART sant 34 84 IPR001005 -
Pvu5g1194 478 SMART sant 87 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1194 Pvu-Chr5 33409882 33413659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1194 31 478 MYB Transcription Factor Family AT2G32460 38.196 1.59e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g1194 Myb_DNA-bind_6 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1194 K09422 - gmx:100798860 714.146