Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1188 ATGAAGAAATTCATGGTTTTGCACCTTGTGACATGGATTTGGATATGTGGTGTTGCTCACAGCACAAGGCCTGCCAGTGTGAACATTGGTGCGGTTTTTGCTTTCAATTCGGTCATAGGTAGAGTTGCGAAGGAAGCTATGGAAATGGCCGTTTCTGATGTCAATGGGGACCCCACAGTTCTCAAGGGAACCAAACTCAACTTGATAATGAAGGATGCCATGTGCAATGCTTTTCTGGGATCAATTGGAGCTTTTCAGTTACTTGAGAAAGGGGTTGCAGCCATAATTGGTCCCCAGTCATCTGCCGTAGCTCACACAGTTTCTCAAATTGCTGATGCTCTCCAAGTTCCTCTTGTTTCCTATGCTGCCACTGATCCAACCCTGTCCTCCCTCCAGTTTCCTTTCTTTATTCGATCAACGCAAAGCGACTTGGCACAAATGACCGCAATGGCTGATCTAATTGACTTTAATGGATGGAAAGAGGTCATTGTTGTATTCTTAGATGATGATTATGGTAGAAATGGAATATCTGCTTTAAGTGATGAACTTGAAAAGAGGAGATTAAAAATTTCTTATAAACTGCCTTTGAGTATTAAGTTTGATCTGGATGAAATCACCAACTTACTCAATCAATCCAAATTGTTTGGTCCTCGTGTTTATGTTGTTCATGTCAACCCTGATCCGAGATTGAGAATTTTTTCTGTTGCCCATAAACTTCAAATGATAGCCAAGGATTATGTCTGGCTTGTCACGGATTGGCTCTCAGCTACGATAGGTTCATTATCCCCAGTGAATCAGACCTCTTTCAGTGTTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTTTGGATTCCAGGAAAAAGAGAGCTTTCGTTTCTCGGTGGACAAAAAGGCAAAGAGATGGATTGACAAATGCTAGTTTGAACTCCTATGGATTTTCTGCTTATGACACGGTTTGGGCAATTGCACTTTCAATTGATAAGTTCATCAAAGTAAATAATTTTACCTTCATGTTTCATGATAAGTATAAGCTATCTCATACAGAAGGAATTGGCGTCCAGCTTGACAAACTCAAAATCTTCACTGGTGGATCTGATCTGGTCAAGATATTATTACAATCAAATTTTACTGGTGTGAGTGGTCAAGTTATGTTTAATTCTGATAGAAATATTGTAAGTGGTGGTTATGATATTATCAATGTCAATCAGTTGGGAATTACTAGGGTTGGTTTTTGGTCTAATTATACTGGATTTTCAGTTGTACCCCCTGCGACTCTTAAAAAAAAGGAACACAGCAGGTTTTCCAAAGATCAGAAGCTTGACAACATTACTTGGCCAGGTGGAAAGACAGATCGACCACGTGGCTGGGTGATTGCTGATAATACCAAGCCACTGAGAATTGGAGTGCCAAAAAGAGCAAGTTTTGTTGAATTTGTAACTGAAGTGCCAAATAGTCATGAAATTCAGGGGTATTGCATCGATGTGTTCAAGAAAGCCCTAGATTTTATCCCATATGAAGTTCCCTTTGTATTCAAGCCTTTCGGGAATGGTAAAGCAAATCCCAATTATGATGAACTTGTGAAAAGGGTTGCTGATAATGTATATGATGCTGTTGTAGGAGACATTGCAATTGTGACAAACCGTACAAGGATTGTTGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAAAGCAGGATCAAATGCTTGGGTCTTCCTCAAACCATTTACAGCAGATATGTGGTGTGCTACTGCTGCCTCATTTTTGGTGATTGGAATTGTTATATGGATTCTTGAGCACCGAGTCAACAATGACTTCCGTGGTCCTCCTAAGAAGCAAATTGTAACAATGTTAATGTTCAGCCTCTCAACCCTGTTTAAGAAAAATCAGGAAGATACCATAAGCTCCCTTTCTAAAATGGTGATGATAGTCTGGCTTTTTCTATTGATGGTGATCACGGCTAGCTATACAGCTAGCTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCGCCCATCACAGGAATTGAGAGCTTGATTGGAAGTAACTGGCCGATCGGATACCAAGTAGGGTCATTTGCTTACAGCTATCTGGCAGATAATCTTTATGTATCAAAATCAAGGCTTATTCCACTAGGCTCCCCCGAGGAATATGCTTTAGCACTGCAGAAGGGACCGTCTGGTGGAGGGGTGGCAGCTATCGTCGATGAGCTTCCGTATGTTGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATCATCGGACAGCCATTCGCAAAAAGCAGTTGGGGATTTGCTTTTCAAAGAGAATCTCCTTTTGCCTTTGACATGTCTACAGCAATTTTGAAACTTTCTGAGAATGGGGATCTTCATATGATACATGAGAAGTGGTTCTGTAAAATGGGCTGTCCTGAAGAAAGGACAAGCAACTCCAAGCCTGACCAGCTTCACTTGGTTAGCTTTTGGGGCCTGTATCTCTCATGTGGTGTTGTCTCTCTTGCTGCACTTTTTCTGTTTCTGCTGCTAATGATTCGGCAATACGCCCGCTTCAAACAAAAGCAAAAGGATATTGCTTCTTCGTCCCCAGAACAACCATCAGGCAGTCATTGTTCCCAGGTTGTTGTTAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATAAAGAAAATGTTCACTCCATCTGACAATCATCACAACCCCAACTGA 2730 0.4114 MKKFMVLHLVTWIWICGVAHSTRPASVNIGAVFAFNSVIGRVAKEAMEMAVSDVNGDPTVLKGTKLNLIMKDAMCNAFLGSIGAFQLLEKGVAAIIGPQSSAVAHTVSQIADALQVPLVSYAATDPTLSSLQFPFFIRSTQSDLAQMTAMADLIDFNGWKEVIVVFLDDDYGRNGISALSDELEKRRLKISYKLPLSIKFDLDEITNLLNQSKLFGPRVYVVHVNPDPRLRIFSVAHKLQMIAKDYVWLVTDWLSATIGSLSPVNQTSFSVLQGVVGLRQHILDSRKKRAFVSRWTKRQRDGLTNASLNSYGFSAYDTVWAIALSIDKFIKVNNFTFMFHDKYKLSHTEGIGVQLDKLKIFTGGSDLVKILLQSNFTGVSGQVMFNSDRNIVSGGYDIINVNQLGITRVGFWSNYTGFSVVPPATLKKKEHSRFSKDQKLDNITWPGGKTDRPRGWVIADNTKPLRIGVPKRASFVEFVTEVPNSHEIQGYCIDVFKKALDFIPYEVPFVFKPFGNGKANPNYDELVKRVADNVYDAVVGDIAIVTNRTRIVDFSQPFASSSLVIVAPINKAGSNAWVFLKPFTADMWCATAASFLVIGIVIWILEHRVNNDFRGPPKKQIVTMLMFSLSTLFKKNQEDTISSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIESLIGSNWPIGYQVGSFAYSYLADNLYVSKSRLIPLGSPEEYALALQKGPSGGGVAAIVDELPYVELFLSKETDFGIIGQPFAKSSWGFAFQRESPFAFDMSTAILKLSENGDLHMIHEKWFCKMGCPEERTSNSKPDQLHLVSFWGLYLSCGVVSLAALFLFLLLMIRQYARFKQKQKDIASSSPEQPSGSHCSQVVVNFFNFIDEKEEAIKKMFTPSDNHHNPN* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1188 909 SMART GluR_14 466 807 IPR001320 GO:0015276|GO:0016020
Pvu5g1188 909 Gene3D - 45 393 - -
Pvu5g1188 909 Pfam Ligand-gated ion channel 806 837 IPR001320 GO:0015276|GO:0016020
Pvu5g1188 909 Gene3D - 457 575 - -
Pvu5g1188 909 CDD GluR_Plant 463 805 - -
Pvu5g1188 909 PANTHER GLUTAMATE RECEPTOR 3.7 10 907 - -
Pvu5g1188 909 Gene3D - 576 704 - -
Pvu5g1188 909 Gene3D - 771 805 - -
Pvu5g1188 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 907 - -
Pvu5g1188 909 CDD PBP1_GABAb_receptor_plant 28 422 IPR044440 -
Pvu5g1188 909 Pfam Receptor family ligand binding region 44 402 IPR001828 -
Pvu5g1188 909 SUPERFAMILY Periplasmic binding protein-like II 444 805 - -
Pvu5g1188 909 PIRSF IGluLR_plant 1 909 IPR017103 -
Pvu5g1188 909 Gene3D - 736 770 - -
Pvu5g1188 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Pvu5g1188 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
Pvu5g1188 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 231 254 - -
Pvu5g1188 909 Pfam Bacterial extracellular solute-binding proteins, family 3 466 805 IPR001638 -
Pvu5g1188 909 SUPERFAMILY Periplasmic binding protein-like I 22 456 IPR028082 -
Pvu5g1188 909 Gene3D - 142 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1188 Pvu-Chr5 33247418 33252583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1188 23 907 Ion Channels AT2G32400 56.614 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1188 K05387 - gmx:100796389 1601.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1188 5 33247418 33252583 Pvu5g1188 5 33247418 33252583 ECH
Pvu11g1074 11 11925343 11931309 Pvu5g1188 5 33247418 33252583 PCT