Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1187 ATGGAGATGATGTGGGTCACAAGTCAGGGAAGAATGTTTTTAGGAAGGGTGTTGTTTCTCTTGGTTTTGTTCTTGTGGATTCCGACACAGGGAGTGGTGGGAAGGACAGGAACTACTATCACAAACTCTTCTACTTCTTCGAAACCAAGAGTTTTGAGAGTTGGAGCACTGTTCAGTCTTAATTCTATAATTGGAAGATCATCTAAACCTGCATTCGTGGCTGCTTTCGAAGATGTTAATGCTGATTCAAGCGTTCTCCCTGGCATTAAACTGGAAGCTGCTTTGCATGATACAAATTGCAGTGGGTTTGCTGGAACAATGGAAGCTTTGCAGTTGATGGAGGATGAAGTGATTGCTGCAATTGGTCCACAGTCCTCAGGAATAGCCCATGTCATCTCTCATGTGGCCAATGAACTCCATGTTCCTCTTGTTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTATTATCAGATGTATGCAATTGCAACTTTGGTAGATTACTACAGATGGAGGGAGATAATAGCCATTTATGTAGATGATGATAATGGAAGAAATGGAATTTCAGTACTAGGAGATGCTCTGGCAAAAAAACGTGCCAAGATTTCTTACAAGGCTGCATTTCCTCCTGGGGCCCTCAAGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAGTCACGGGTCTTTGTTTTGCATGCTAATCCTGAAACTTGTTTGAGCATTTTTTCTATTGCTGAGAAGCTAGGAATGATGGACGATGGCTATGTATGGATTGCAACAGATTCGCTTGCTTCAGCACTTGATTCAATAGAGCCAGTTGATCCTAAAACATTGAATCTCCTACAAGGGGTTTTGGCTTTACGTCATCACACTCCTGATACTAATGAAAAGAAGAATTTTTTCTCCAGGATGAAGAGACTAATAAACAAGGAGACTCCAAGCTTCAATTCCTATGCATTGTATGCATATGATACCGTTTGGTTAGTAGCCCGTGCTCTTGATGCTTTTTTGAAAGAAGGTGGTGTGGTATCTTTCTCCCCTGACCCTAAATTGAGCGACACAAATGGAAGCACACTGCATTTAGAATCACTTCATGTTTTTGATGAAGGCCCTACTTTTCTGCAGACAATTTTGAGAACCAACTACACTGGTTTGACTGGACTAGTTCAGTTTGATAATGAAAGGAATAGAATTCATCCAGCATATGATATCTTGAACATTGGTGGATCTGGAATGCGCAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCGGTTGTGGCTCCAGAAATTCTGTATAAGAAGCCACCTAACACTTCAACGAGCAGCCAGAAACTATACGATGTTATATGGCCTGGAGAAACTGCAGTTAAACCAAGAGGATGGGTGTTTCCCAACAATGGAAAGCCACTGAGAATTGCAGTGCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGAGTAAGAGGCTATTGCATTGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCGCGAGAATACATATTATTTGGACCTGGTAACAGAAATCCTAGCTACGATGACCTTGCAAGTCAAGTTGAACTAAATACCTATGATGCAGCTGTTGGTGATGTTACAATTGTCCCCAACAGGACAAGGTTTTTGGATTTTACTCAACCTTACATAGAATCAGGCCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTTCTCAAGCCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTGTCCTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCGGAGTTCCGTGGTAGACCAAAGAAACAACTCATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTGGTCTTGGGAGATTGGTTCTAATCATATGGCTTTTTGTGGTGCTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTGTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAAGTAATCAACCAATTGGAATTCAAGAAGGGTCATTTGCACGGAAGTATTTGACAGAAGAACTCAATGTACAACCATCAAGGATAGTTACATTGAAGAATATGGAGGCATATATTGATGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTGTGGCTGTTGTTGATGAGCTTCCTTATATTGAAATCTTAATGTCCAATACAAACTGTAAGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAAATCCATGACAAATGGCTCTTAAAACAGGATTGTTCTACACAAGAAAATAATGTGGATTTAAACAAACTATCTCTGAGTAGCTTCTGGGGCCTCTTTCTTATATGCGGCATTGCATGTCTCCTTGCTTTGATTGCATTCTTCACTAGAGTGCTATGTCAATACACAAAATTCAGCCCAGAACATGAGCAACATGATGAGGAAATTTCACCAGTCAGGCCTAAAGGTAAAGGGCCTTTTGGAACCACTAATAGCTTCAGAAACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAAGCAGAAGAGTAAGAAAAGGAGACGCAGTCTGAGCTTAGATGGCCAATCTAGTTCATCTGCCTAA 2841 0.4146 MEMMWVTSQGRMFLGRVLFLLVLFLWIPTQGVVGRTGTTITNSSTSSKPRVLRVGALFSLNSIIGRSSKPAFVAAFEDVNADSSVLPGIKLEAALHDTNCSGFAGTMEALQLMEDEVIAAIGPQSSGIAHVISHVANELHVPLVSFGATDPSLSSLQYPYFVRSTQSDYYQMYAIATLVDYYRWREIIAIYVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGALKKDISDLLNGVNLMESRVFVLHANPETCLSIFSIAEKLGMMDDGYVWIATDSLASALDSIEPVDPKTLNLLQGVLALRHHTPDTNEKKNFFSRMKRLINKETPSFNSYALYAYDTVWLVARALDAFLKEGGVVSFSPDPKLSDTNGSTLHLESLHVFDEGPTFLQTILRTNYTGLTGLVQFDNERNRIHPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQKLYDVIWPGETAVKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPREYILFGPGNRNPSYDDLASQVELNTYDAAVGDVTIVPNRTRFLDFTQPYIESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFVLVGTVVWILEHRHNPEFRGRPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSNQPIGIQEGSFARKYLTEELNVQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYIEILMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKQDCSTQENNVDLNKLSLSSFWGLFLICGIACLLALIAFFTRVLCQYTKFSPEHEQHDEEISPVRPKGKGPFGTTNSFRNLIYFVDKKEKEIKEILKQKSKKRRRSLSLDGQSSSSA* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1187 946 Coils Coil 914 934 - -
Pvu5g1187 946 SUPERFAMILY Periplasmic binding protein-like II 465 829 - -
Pvu5g1187 946 PANTHER GLUTAMATE RECEPTOR 3.4 40 929 - -
Pvu5g1187 946 CDD PBP1_GABAb_receptor_plant 53 444 IPR044440 -
Pvu5g1187 946 CDD GluR_Plant 485 828 - -
Pvu5g1187 946 SMART GluR_14 488 830 IPR001320 GO:0015276|GO:0016020
Pvu5g1187 946 Gene3D - 167 440 - -
Pvu5g1187 946 Gene3D - 482 597 - -
Pvu5g1187 946 Pfam Bacterial extracellular solute-binding proteins, family 3 544 829 IPR001638 -
Pvu5g1187 946 Gene3D - 70 415 - -
Pvu5g1187 946 Gene3D - 598 718 - -
Pvu5g1187 946 Gene3D - 719 832 - -
Pvu5g1187 946 PIRSF IGluLR_plant 12 946 IPR017103 -
Pvu5g1187 946 SUPERFAMILY Periplasmic binding protein-like I 47 479 IPR028082 -
Pvu5g1187 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 65 81 - -
Pvu5g1187 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 125 153 - -
Pvu5g1187 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Pvu5g1187 946 Pfam Ligand-gated ion channel 830 861 IPR001320 GO:0015276|GO:0016020
Pvu5g1187 946 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 929 - -
Pvu5g1187 946 Pfam Receptor family ligand binding region 69 424 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1187 Pvu-Chr5 33238941 33244051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1187 48 795 Ion Channels AT1G05200 68.048 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1187 K05387 - gmx:100799912 1615.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1187 5 33238941 33244051 Pvu5g1187 5 33238941 33244051 ECH
Pvu5g1187 5 33238941 33244051 Pvu11g1074 11 11925343 11931309 PCT