Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1185 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCCATGATTGGAAGAAACGGCAACGTTGTTGGCTTTGGATTATCTTCAGGGCTCTCTCTTGGCCAGATTGAAAACCATAAGGCCTCGGAATCTCAAAGATCTGTAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAGCTTCTCCCCCTGGACATGCCTCAGAACACTTCAGAGAGCGATGTCCCAAGAATCCGCGAAGATGACTTTGACAGTGCCACCAAGTCAGGAAGTGAAAACCAAGAAGGTGCTTCTGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAAATGGAAGCATTCTTTAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAAGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACTCAGATAAAGACCCAACATGAGCGCCATGAGAACACACAGCTCCGAACTGAAAACGATAAGCTTCGAGCTGACAACATGAGGTTCAGGGAAGCTCTCAGCAATGCCTCGTGTCCTAATTGTGGAGGACCAACCGCTATAGGGGAAATGTCATTCGACGAACATCACCTGAGGCTCGAAAATGCACGCCTCAGAGAAGAGATTGATAGGATTTCTGGCATTGCTGCAAAGTACGTGGGGAAGCCTGTGGTGAGCTATCCACTTCTTTCTCCTTCATCTGTTCCTCCGCGTCCACTTGAGCTTGGGATTGGAGGACAAAATTCAAGATTTCTCTTCAGCATGTCTGAGGCTGATAAGCCCATAATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCACAGATGGGTGATCCTCTTTGGTTGACTACCCTGGATGGAACTACCACTGTGCTCAACGAGGATGAATACATCAGGTCTTTTCCTCGGGGAATTGGTCCTAAACCCGCTGGTTTCAAGTGCGAAGCTTCACGGGAGAATGCCGTTGTTATCATGAACCATGTTAGCCTTGTTGAGATTCTCATGGACGTGAACCAATGGTCCACAGTGTTCTCTGGCATAGTCTCAAGAGCAATGACGTTGGAAGTGTTATCAACAGGGGTGGCGGGGAATTACAACGGTGCATTGCAAGTGATGACAGCAGAAGTACAAGTACCTTCACCTCTAGTGCCAACTAGAGAGAGCTATTTTGTAAGATATTGTAAGCATCATGGTGACGGGACTTGGGCTGTAGTGGACGTGTCCCTGGATAATTTGCGTCCTAGTCCCTCAGCCAGATGTAGAAGAAGGCCTTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATTTGGGTTGAGCATGTTGAAGTGGATGACAGAGGTGTTCACAATCTATACAAGCAGCTTGTTAGTTCTGGGCATGCATTTGGTGCAAAACGTTGGATTGCCACCTTGGATCGACAATGTGAAAGGCTTGCTTGTGCCATGGCAACAAACATTCCTACAGTAGATGTTGGAGTGATAACTAACCAAGATGGAAGGAAGAGTATGCTGAAACTGGCAGAGAGAATGGTTATAAGCTTTTGCGCTGGAGTGAGTGCATCTACTGCACACACATGGACAACACTCTCTGGAACTGGAGCTGATGATGTAAGGGTCATGACACGTAAGAGTGTAGATGACCCAGGAAGGCCTCCTGGCATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTCCCAGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGTGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAATGGAGGAGTTGTTCAGGAAATGGCACACATTGCCAATGGACGAGAAACTGGAAATTGTGTCTCTCTACTTCGAGTGAATAGTGCGAATTCAAGCCAGAGTAACATGTTGATATTGCAAGAGAGTTGCGCAGACTCAACAGGGTCATTTGTGATCTATGCTCCTGTAGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCTGACTACGTGGCCCTTCTTCCTTCAGGATTTGCTATTCTCCCAGATGGGACCACTGCACATGGAGGAAGCATTGGTGACACTGGAAATGGTGGATCTCTTTTGACTGTGGCCTTCCAAATCTTGGTTGATTCAGTTCCAACGGCAAAGCTCTCTCTTGGATCAGTTGCCACTGTTAACAATCTTATTGCCTGCACTGTTGAGAGAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGA 2292 0.4729 MPAGIMIPARNMPSMIGRNGNVVGFGLSSGLSLGQIENHKASESQRSVEMFQPNLMEAGQLLPLDMPQNTSESDVPRIREDDFDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQIKTQHERHENTQLRTENDKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISGIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGQNSRFLFSMSEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASRENAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEVQVPSPLVPTRESYFVRYCKHHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLACAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRETGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGSIGDTGNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1185 763 CDD START_ArGLABRA2_like 279 503 - -
Pvu5g1185 763 SUPERFAMILY Homeodomain-like 98 166 IPR009057 -
Pvu5g1185 763 SUPERFAMILY Bet v1-like 524 755 - -
Pvu5g1185 763 Pfam START domain 285 504 IPR002913 GO:0008289
Pvu5g1185 763 SMART HOX_1 107 170 IPR001356 GO:0003677
Pvu5g1185 763 Gene3D - 339 501 IPR023393 -
Pvu5g1185 763 SUPERFAMILY Bet v1-like 277 505 - -
Pvu5g1185 763 Gene3D - 94 182 - -
Pvu5g1185 763 MobiDBLite consensus disorder prediction 82 117 - -
Pvu5g1185 763 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Pvu5g1185 763 CDD homeodomain 109 167 IPR001356 GO:0003677
Pvu5g1185 763 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Pvu5g1185 763 SMART START_1 284 504 IPR002913 GO:0008289
Pvu5g1185 763 ProSiteProfiles START domain profile. 275 507 IPR002913 GO:0008289
Pvu5g1185 763 Coils Coil 172 192 - -
Pvu5g1185 763 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 63 760 - -
Pvu5g1185 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 760 IPR042160 -
Pvu5g1185 763 Pfam Homeodomain 109 164 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1185 Pvu-Chr5 33211635 33217466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1185 50 763 Homeobox Transcription Factor Family AT1G05230 77.808 0.0 1136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu5g1185 START 9e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1185 K09338 - gmx:100809556 1404.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1185 5 33211635 33217466 Pvu5g1185 5 33211635 33217466 ECH
Pvu5g1185 5 33211635 33217466 Pvu11g1078 11 12001642 12008127 PCT