Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1181 ATGAATGACCTTCTCACTGATTCATTTGTTGGTGAGGCTAGTAATGGCCATCCTTCTAGAGAAAGTGACATTGAAATGGGACAGGTTCCGAGAAGCAACTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCATGAGGCTGATAAACAGATCGATAAGCTGGCTGTGCTACTTCAAAAGTTAAAGGAAGCTAATGAGGAATCGAAAGCTGTTACAAAAGCATCTGCCATGAAAGGTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCTCATGGTGTCAAAGCAAAGATAGAGGCTATAAACAGAGATAACCTATCCAATAGACAAAAGCCTGGCTGTGAAAAGGGAACAGGTATAGACAGAGCAAGAATGAATATGACAAATGCCTTGACTAAAAAATTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATAACAGTTACTGGGACTAGGCCAGATGATGAGACAATTGATCACCTCATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGAGGACAGGTAGTAAACACAGTAGAAGAAATTCAGGAGAGACATGATGCTGTGAAAGAGATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGGTGACAAACGCAACTGATCATGTGAGACTGGGTAACGACGCTCTCCAAACTGCAAAAAGTCTGCAAAAGAAGTCAAGAAAATGCATGATGATTTCCGTTATATTGCTCCTGGCCATCGCCCTCATCATCGTACTCGCTGTTTTGAAACCATGGAAGAAGTGA 918 0.4041 MNDLLTDSFVGEASNGHPSRESDIEMGQVPRSNSDMGMEAFNKQIHEADKQIDKLAVLLQKLKEANEESKAVTKASAMKGIKKRMEKDIDEVGKIAHGVKAKIEAINRDNLSNRQKPGCEKGTGIDRARMNMTNALTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVTNATDHVRLGNDALQTAKSLQKKSRKCMMISVILLLAIALIIVLAVLKPWKK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1181 305 MobiDBLite consensus disorder prediction 1 35 - -
Pvu5g1181 305 CDD SynN 38 195 IPR006011 GO:0016020
Pvu5g1181 305 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Pvu5g1181 305 SMART tSNARE_6 203 270 IPR000727 -
Pvu5g1181 305 MobiDBLite consensus disorder prediction 1 15 - -
Pvu5g1181 305 SMART SynN_4 33 159 IPR006011 GO:0016020
Pvu5g1181 305 PANTHER SYNTAXIN 10 299 IPR045242 -
Pvu5g1181 305 CDD SNARE_syntaxin1-like 207 269 - -
Pvu5g1181 305 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 299 - -
Pvu5g1181 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Pvu5g1181 305 Coils Coil 38 75 - -
Pvu5g1181 305 Gene3D - 201 301 - -
Pvu5g1181 305 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Pvu5g1181 305 Pfam SNARE domain 244 296 IPR000727 -
Pvu5g1181 305 Gene3D - 38 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1181 Pvu-Chr5 33088052 33095292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1181 1 303 SNARE and Associated Proteins AT3G03800 60.726 1.80e-122 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1181 K08486 - gmx:100800991 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1181 5 33088052 33095292 Pvu5g1181 5 33088052 33095292 ECH