Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1180 ATGGCTGACTCCAATACCTCTTCCACTCAAACTTCTTCACATTCTTCTGATTCAGGGAAGCGTGGAACTTCCAAGGTTGAGTTTTCTGAAGACGAGGAAACTCTTATTACCAGGATGTATAAACTGGTTGGGAAAAGGTGGTCTTTAATTGCTGGAAGAATTCCTGGAAGAACAGCAGAGGAAATAGAGAAGTATTGGACTTCGAAACTCTCGAGTTCTAGTAAATGA 228 0.4123 MADSNTSSTQTSSHSSDSGKRGTSKVEFSEDEETLITRMYKLVGKRWSLIAGRIPGRTAEEIEKYWTSKLSSSSK* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1180 75 MobiDBLite consensus disorder prediction 1 19 - -
Pvu5g1180 75 Gene3D - 27 75 - -
Pvu5g1180 75 CDD SANT 27 70 IPR001005 -
Pvu5g1180 75 PANTHER AND CPC, PUTATIVE-RELATED 3 74 - -
Pvu5g1180 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 3 74 - -
Pvu5g1180 75 Pfam Myb-like DNA-binding domain 25 67 IPR001005 -
Pvu5g1180 75 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Pvu5g1180 75 SUPERFAMILY Homeodomain-like 25 70 IPR009057 -
Pvu5g1180 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 74 IPR017930 -
Pvu5g1180 75 MobiDBLite consensus disorder prediction 1 29 - -
Pvu5g1180 75 SMART sant 24 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1180 Pvu-Chr5 33083164 33084566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1180 13 71 MYB Transcription Factor Family AT5G14750 49.153 5.48e-16 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu5g1180 Myb_DNA-binding 4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1180 - - gmx:100801532 121.709