LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu5g1178	ATGAGAGTTGCTATTGTCACAAGAGCAAACCAATTTTTCATTGAAGTTGGTGCCCAAGAAACAGTTCTAGCAATCAAGAGGAAAATAGAGCAACTTCATGGGGTTCCAGTGGCTTCACAAGTCCTTTCAGTTACTGGGTGGGAACTAGTTGATGGATTAGACATGGATGATTATCCAATAGTCACTGAAGGTACAAAAATTGACCTCACCATCAAACCAGTAGAGCCACACCCTAACAAAATGCAAATCACAGTGAAATTTTCAGCTAAAAAGCTCAACATTGAGGTGGACAGAACTGACACTGTTCGCAGCTTGAAGGAAAAAATTCACATTCTTGATAGCACCCCCATCAAAAGAATGACACTCTACTTTTCAGGGACTGAACTGGATGAAGATTTTAGAACCTTAAGTGAATATAGCATTCGGGAATTTTCTGAAATTGTTGTGTTCCTCAAGACCATGAATCGATCAAGAGATGAACCTCCCACAAGGAAGTTAAGCTTGGTGGTACAAACTTCCTCTAGCTTGCTTAATGCAGCCACCATTCCATTGGAGATGAGGGATGCAAACACAGTGAATGACTTGAAGCAGTTACTGATAAGCAGAAAGATTCTGCCTGCTGATGACTATTTGTTTATACACAGGCAGAGGATCATGCGTGATAGTTGTAGCCTCAGGTGGCATGGAGTTGAAAATGGAGACTGTCTCTATGTGTTTAAGGGGACAGTTAGCAGTAGTGGATATGCATGA	750	0.4133	MRVAIVTRANQFFIEVGAQETVLAIKRKIEQLHGVPVASQVLSVTGWELVDGLDMDDYPIVTEGTKIDLTIKPVEPHPNKMQITVKFSAKKLNIEVDRTDTVRSLKEKIHILDSTPIKRMTLYFSGTELDEDFRTLSEYSIREFSEIVVFLKTMNRSRDEPPTRKLSLVVQTSSSLLNAATIPLEMRDANTVNDLKQLLISRKILPADDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSSSGYA*	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu5g1178	249	Gene3D	-	154	245	-	-
	Pvu5g1178	249	CDD	Ubl_ubiquitin_like	181	239	-	-
	Pvu5g1178	249	Gene3D	-	1	72	-	-
	Pvu5g1178	249	Gene3D	-	80	152	-	-
	Pvu5g1178	249	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	1	247	-	-
	Pvu5g1178	249	PANTHER	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	1	247	-	-
	Pvu5g1178	249	SUPERFAMILY	Ubiquitin-like	73	160	IPR029071	-
	Pvu5g1178	249	Pfam	Ubiquitin family	8	72	IPR000626	GO:0005515
	Pvu5g1178	249	Pfam	Ubiquitin family	83	153	IPR000626	GO:0005515
	Pvu5g1178	249	Pfam	Ubiquitin family	177	238	IPR000626	GO:0005515
	Pvu5g1178	249	ProSiteProfiles	Ubiquitin domain profile.	81	156	IPR000626	GO:0005515
	Pvu5g1178	249	ProSiteProfiles	Ubiquitin domain profile.	1	60	IPR000626	GO:0005515
	Pvu5g1178	249	ProSiteProfiles	Ubiquitin domain profile.	166	238	IPR000626	GO:0005515
	Pvu5g1178	249	SUPERFAMILY	Ubiquitin-like	1	76	IPR029071	-
	Pvu5g1178	249	SUPERFAMILY	Ubiquitin-like	177	242	IPR029071	-
	Pvu5g1178	249	SMART	ubq_7	1	72	IPR000626	GO:0005515
	Pvu5g1178	249	SMART	ubq_7	81	152	IPR000626	GO:0005515
	Pvu5g1178	249	SMART	ubq_7	166	241	IPR000626	GO:0005515
	Pvu5g1178	249	CDD	Ubl_ubiquitin_like	83	150	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu5g1178	81	152	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	36.986	5.05e-07	45.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu5g1178	-		-	gmx:100781557	437.187

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu5g1178	5	33060060	33060809	Pvu5g1178	5	33060060	33060809	ECH