Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1176 ATGGAACCCATTTGCCCTATTGGGTTGCCGTGTGCCTCTGAAATCTCTGCTCTCCTCTCTCCTACCTCACCACGTCAAATACAGGAATATTATCACAACCTTTTGTCTTCAAGAGGGTGCACTGGTATCTCAGTCAAACAGGATGGCCACTTTGGAAAAGGTGTTTATGCAGACATGGACTTCAAAGAGGGAGAACTTGTTCTGAAGGATCCCATGTTCGTAGGGGTTCAACATTCCCTCAACAAGATTGATTGTTTGGTCTGTAGTTTCTGCTTTCGTTTTATTGGCTCCATTGAACTTCAAATAGGAAGGAGGCTTTACATGAAGCAACTAAGGGCCAATGAGAGTCATGGATGTGATGCCGGAAACTCTTCACAACACTTTCATGGAATGGATTCGTCTGATGAAGAAGAGAACACTCAGCAATGTACTTCTGGGATTTCCAAAACTAAGGTTCCTCTCCCTGAAGGTGTTGTGGAATCATTAATGAATGGTAAATTGGTGTTGCCTTGCTCAGAGAAGTTCTCCTTGTTGCCAGCTGTGCCATGCCCTCGTGGATGTGAAGAAGCTTACTATTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTTGCTACTCTGTACTGGTGAGAGTTCTGATCCAGCTCGTAGAGAGGCACTCCTTAAATTCATCAAACATGCTAATGAAACAAATGACATATTCATCCTTGCTGCCAAGGCTATTTCTTCAACCATATTAAGGTATCGCAAGTTAAAAGCAGTCAGTCTTGAAAAACAAGTGAAACATGATACATCCTGTGCTTCAAACGACCGAAGTTTATCTTTTCTTTTGGAAGCTTGGAGGCCTATATCGATGGGACACAAGAAAAGGTGGTGGGACTGTATTGCTTTGCCAGATGATGTGGATTCTTCTGACGAACCTTCATTCAGGCTGCAAATCAAAGAGTTGGCATTTGAGTCTCTGCAACTTCTTAAGGCAGCCATATTTGACAAGGAATGTGAGCCATTATTCTCCCTTGAAATCTATGGGCATATCATCGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTGGCTTCTCCGGTGGAGGATTACTTTTTATACATTGATGATCTGACACATCCTAACAAGGAAGAGGCTGAGAAAATTACACAACCGATTCTGGATGCACTTGGTGAAGACTATTCTATTTGTTGCGAAGGGACTGCATTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAAAGATGGCCAAGCAACAATAATTGCACAGAGGTCCATTTGTAAAGGAGAAGAGATAACCATATCATATGTTGATGAGGACCTTCCATTTGAAGAGAGGCAGGCATCCCTTGCAGATTATGGTTTCAGATGCAGGTGTCCAAAGTGCATTGAAGAAGAGTCATAA 1455 0.4261 MEPICPIGLPCASEISALLSPTSPRQIQEYYHNLLSSRGCTGISVKQDGHFGKGVYADMDFKEGELVLKDPMFVGVQHSLNKIDCLVCSFCFRFIGSIELQIGRRLYMKQLRANESHGCDAGNSSQHFHGMDSSDEEENTQQCTSGISKTKVPLPEGVVESLMNGKLVLPCSEKFSLLPAVPCPRGCEEAYYCSMSCAEADWESSHLLLCTGESSDPARREALLKFIKHANETNDIFILAAKAISSTILRYRKLKAVSLEKQVKHDTSCASNDRSLSFLLEAWRPISMGHKKRWWDCIALPDDVDSSDEPSFRLQIKELAFESLQLLKAAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLTHPNKEEAEKITQPILDALGEDYSICCEGTAFFPLQSCMNHSCCPNAKAFKRDEDKDGQATIIAQRSICKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEES* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1176 484 MobiDBLite consensus disorder prediction 120 148 - -
Pvu5g1176 484 ProSiteProfiles SET domain profile. 41 454 IPR001214 GO:0005515
Pvu5g1176 484 Pfam SET domain 52 453 IPR001214 GO:0005515
Pvu5g1176 484 SUPERFAMILY HIT/MYND zinc finger-like 178 211 - -
Pvu5g1176 484 CDD SET_SMYD 393 479 - -
Pvu5g1176 484 Gene3D SET domain 373 484 IPR046341 -
Pvu5g1176 484 SUPERFAMILY SET domain 40 479 IPR046341 -
Pvu5g1176 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 15 483 IPR044237 GO:0008168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu5g1176 SET 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1176 - - gmx:100803651 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1176 5 33034800 33040797 Pvu5g1176 5 33034800 33040797 ECH