Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1172 ATGGAACCTCTGTGTGAGTTTTGTTGGGCTGTGAGAGCTGTGGTTTACTGCAAGGCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTACACACTGCAAATTCTTTGTCTCGGAGGCATTCGCGTTCCCTCCTTTGCGATAAGTGCAATTCCCAGCCAGCAATGATACGTTGCATGGATCATAAGTTGTCTTCGTGTCAAGGTTGCGACTGGAACCCGAATGATTGTTCTGCATTGGGACATAGGCGCCTCACGTTGAATTCTTACACTGGTTCTCCTTCTTTGGCTGAGTTTTCTAGGATCTGGTCCTTCGTGTTTGATGTTAATTCCTCCCATGGTGGTTGGGAATTTGTTGGTACTTTGCCAAAAAGTGAGAGCTGCACTAGCCAGTGTTTGGAGCAACCTGATCACAATGGTGGTTCCTTTGGTTTGATGAGTGAGAAGTTGGATGAAATTGAATCTTGTTTCAGATATGAACCTTGGATGGGGCAATGTCACATCATTCCCTCAAATCCAAATTACACACCCTTCTGCAAGGAAGAAGCTTTTTTCCTTCCTCGAGACTCAAACCAGCCAAAGCCGCAGGAGTGTACCGATCTAGGAACTCGTGATGGGAATGGAATCTGTGAAGGTCTGAATGTGGACAGTGCTCCAATAAATTTTGAAAGTGCTGATGAAATATTTGGCTGTTCACAAGCTGCCACAAGATACCCCCTTGAAGATGGAGGAATGGACTGTCTATTGATGGATAAAAACATATCAGTCACCGAATCTAGTTCACTTATTGAGAGTGCCTTAGAGGCATCATCATCAATTCAACAAGATTGTGTGGCTTTTCAGTCATCCGGGGCTGGTGGATCAGTTAGTGTGATGCAGGTCATGAACAGTAATACAAATTGTGCACTTATGAATCCTAGCAGCACTAGAAACATCAGTCTGGGATTTCCTCAGGGTCAAGTTCATTCAAGCATACCTCTTCAATTAGGCAACATTGTGGGTGAAAATAGTTCTACTGAATATCAAGACGGGGGTATATCGCCAATGTTTCTGCCGGGTGAATTCCCCTGGGAATCAAATTTGGAGGGTACTTGCCCACAGGCAAGGGATAAAGCTAAAATGAGATACAATGAAAAAAAGAAAACTCGAACGTTTGGTAAACAAATAAGATATGCATCTCGCAAAGCGAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGACCCTCTTGTGACAAGGGACGTCTAA 1281 0.4395 MEPLCEFCWAVRAVVYCKADSARLCLHCDGCVHTANSLSRRHSRSLLCDKCNSQPAMIRCMDHKLSSCQGCDWNPNDCSALGHRRLTLNSYTGSPSLAEFSRIWSFVFDVNSSHGGWEFVGTLPKSESCTSQCLEQPDHNGGSFGLMSEKLDEIESCFRYEPWMGQCHIIPSNPNYTPFCKEEAFFLPRDSNQPKPQECTDLGTRDGNGICEGLNVDSAPINFESADEIFGCSQAATRYPLEDGGMDCLLMDKNISVTESSSLIESALEASSSIQQDCVAFQSSGAGGSVSVMQVMNSNTNCALMNPSSTRNISLGFPQGQVHSSIPLQLGNIVGENSSTEYQDGGISPMFLPGEFPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTRDV* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1172 426 CDD Bbox1_BBX-like 4 47 - -
Pvu5g1172 426 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 2 423 - -
Pvu5g1172 426 ProSiteProfiles CCT domain profile. 370 412 IPR010402 GO:0005515
Pvu5g1172 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 423 - -
Pvu5g1172 426 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu5g1172 426 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pvu5g1172 426 Pfam CCT motif 370 412 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1172 Pvu-Chr5 33007577 33011711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1172 1 420 C2C2-CO-like Transcription Factor Family AT3G21880 43.499 3.53e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu5g1172 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1172 - - vra:106761521 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1172 5 33007577 33011711 Pvu5g1172 5 33007577 33011711 ECH