Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1171 ATGTCAGAAAACCACACAACTTCTCAACCAATACCAGTGAGTCAATCAGTTTCCATTCAAGTGGCCTTAGGTGCAACCAAATGGGCTCTGGTGGGTCACAAATTTAAAGGCTTGTATTCATCTGCATCAAGCTACACCATTTGTTCAAGAAACTACAAAGAAGCTTATCCCATAGAGCTTACAAAAATGTGCAAGGGTGCAGAAGGACAAAAGAAACATGATTTCTGCAGCAGCTTCCTACATGAAGAGAGAGATACAAGAAGTGGTAAATGTTGCGAGCTGTGTGGATTACAGGCTTCATTGTATTGTCAAGCTGATGATGCATACTTGTGTAGAAAATGTGATACAAGGGTTCATGGAGCTAACTTTTTGGCCCTTAGGCACATTAGGTGCTTTCTGTGCAACACATGTCACCACCTTACGCGAAGATATCTCATTGGAGAATCACTAGAGGTGGTTCTTCCACCCAACATAAACTGGGTCATAGGAAATCTTCCTAACAACAGAGGAACCTACGGAAAGTGTTCAAGAATGCATAACAACCCCTCCCTCTTGTTTTAA 561 0.4189 MSENHTTSQPIPVSQSVSIQVALGATKWALVGHKFKGLYSSASSYTICSRNYKEAYPIELTKMCKGAEGQKKHDFCSSFLHEERDTRSGKCCELCGLQASLYCQADDAYLCRKCDTRVHGANFLALRHIRCFLCNTCHHLTRRYLIGESLEVVLPPNINWVIGNLPNNRGTYGKCSRMHNNPSLLF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1171 186 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 75 155 - -
Pvu5g1171 186 CDD Bbox1_BBX-like 91 133 - -
Pvu5g1171 186 SMART bboxneu5 87 133 IPR000315 GO:0008270
Pvu5g1171 186 PANTHER B-BOX ZINC FINGER PROTEIN 29 75 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1171 Pvu-Chr5 33005653 33006629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1171 92 155 C2C2-CO-like Transcription Factor Family AT3G21890 61.538 1.04e-21 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1171 - - pvu:PHAVU_005G113200g 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1171 5 33005653 33006629 Pvu5g1171 5 33005653 33006629 ECH
Pvu5g1171 5 33005653 33006629 Pvu11g1094 11 12428315 12428823 PCT