Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1164 ATGGACATGAATTCCTCAGGTGCTGCCTCCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTGCTGACTTCATGGCTGCAGCAGACTCTGGAGGTTTTAGTTGGGGCCCTCAAAATCACACCTTAAAGGCTCCTTCAAATACAAGCTTGGATATGGAATACTCACTGGATTCAACTGTCCTGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAGTCATGTGCATCTGGCGCCAAGGCATGTCGCGAAAAATTGCGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCCATCTTGGAGCCTGGTAGGCCGCCCAAAACAGACAAAGTTGCAATATTAAGTGATGCTGTTCGAGCGGTAGTCCAATTGAGAAATGAAGCCGAGAGGCTTAAGGAAATGAACGATGAATTACAGGGAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATATGCTGAAGGAAGAGAAAGAAAAGTTGGAGCAACAGGTAAAACTGACAAATGTTATGCAGCACAGCTTCCTGCCTCAAGCCCCAGCTGCTAAAGAACAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGCTATCCTGGAATTGCTATGTGGCAGTTTATGCCCCCTGCTGCAGTGGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 702 0.4544 MDMNSSGAASGWLYDYGFDIPVAGADFMAAADSGGFSWGPQNHTLKAPSNTSLDMEYSLDSTVLENGPSKRLRTESCASGAKACREKLRRDKLNERFLELSSILEPGRPPKTDKVAILSDAVRAVVQLRNEAERLKEMNDELQGKVKELKAEKNELRDEKNMLKEEKEKLEQQVKLTNVMQHSFLPQAPAAKEQVGSHKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1164 233 CDD bHLH_AtILR3_like 82 157 - -
Pvu5g1164 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Pvu5g1164 233 Gene3D - 71 126 IPR036638 GO:0046983
Pvu5g1164 233 Coils Coil 118 180 - -
Pvu5g1164 233 Pfam Helix-loop-helix DNA-binding domain 81 126 IPR011598 GO:0046983
Pvu5g1164 233 Gene3D arf6 gtpase in complex with a specific effector, jip4 127 180 - -
Pvu5g1164 233 SMART finulus 83 134 IPR011598 GO:0046983
Pvu5g1164 233 PANTHER BHLH TRANSCRIPTION FACTOR 1 233 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Pvu5g1164 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 153 IPR036638 GO:0046983
Pvu5g1164 233 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1164 Pvu-Chr5 32927272 32929378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1164 10 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 53.191 5.04e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g1164 HLH 8.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1164 - - gmx:100806838 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1164 5 32927272 32929378 Pvu5g1164 5 32927272 32929378 ECH