Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1160 ATGATAATGTATCCCGGCGACGGCTCCTCCTTGGACCCCATGTTTTCCGGCACCAGTTTGCAGTCACTTCTCTCTCTCAACCCTTCCATCTTGGAAGATGGTTTTCCCACCTTGGCTTCCCTAACCGACGACCCTACCTTAATACCGCAACCTTCAGAAGTTCCAAAGCTTCTCGTTCCCAAAACCGAACCCTCACAACCATTCAAATTCTTCCCCCAATATCATCCCACTCCCTTCCTCCATCTTCCCCAGCTCCGCTCCCCGGACCAGCCTCAGCCAAAACGCCAACGGATGGAGTCTCCGCTGATTCCGCAGAGTAACCTGGCTCGCCAACGCAGACAGAAGCTGAGCGAGAAAACGCGGTACCTGCAGAAACTGATGCCATGGGACAAGAAAATGGATCAAGGGACGCTTCTGGAGGAAGCCTACAAATACGTGAGGTTCCTTCAGGCGCAGTTCCGCGTGCTACAGTCCATGCCCTCCCACTCCTCCTCTTCCTCCTCCTCCTCCCGACAAAATACCGCCGCCGTATTCGTAGATCTGGAGAAGCTGAACCGATCACAACTCCTCCAGGTGCTGGTTAACTCCCCCGTCGCTCAAACAATGCTTTATTCTCAGGGCTTTTGTGTCTTCTCTCTGGAACAGTTATCACTGCTCAGACAATTATCCGACAGAAAACACCAGCACCATGATTCTGCTTTCTCCAAATCTGTTTTCAACTAA 723 0.5201 MIMYPGDGSSLDPMFSGTSLQSLLSLNPSILEDGFPTLASLTDDPTLIPQPSEVPKLLVPKTEPSQPFKFFPQYHPTPFLHLPQLRSPDQPQPKRQRMESPLIPQSNLARQRRQKLSEKTRYLQKLMPWDKKMDQGTLLEEAYKYVRFLQAQFRVLQSMPSHSSSSSSSSRQNTAAVFVDLEKLNRSQLLQVLVNSPVAQTMLYSQGFCVFSLEQLSLLRQLSDRKHQHHDSAFSKSVFN* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1160 240 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 64 237 IPR045843 GO:0003700|GO:0006355
Pvu5g1160 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 159 IPR036638 GO:0046983
Pvu5g1160 240 SMART finulus 106 155 IPR011598 GO:0046983
Pvu5g1160 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Pvu5g1160 240 PANTHER TRANSCRIPTION FACTOR BHLH117 64 237 - -
Pvu5g1160 240 Gene3D - 104 173 IPR036638 GO:0046983
Pvu5g1160 240 MobiDBLite consensus disorder prediction 81 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1160 Pvu-Chr5 32875715 32876575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1160 78 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 37.209 1.34e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g1160 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1160 - - gmx:102666676 270.396