Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1157 ATGCAAGTCACGTCCTCACATAGCCACATGAAAGCTGAGCTGAAGGGCACGTCCATTTCCTTTCAAAACCCTACTACTCTCTTTAACACACCTCACAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTCGGAAGCCTGGATGGAGCTTGTATTGAGAAGCTCTTGCTCCACTGTGCCAGCGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAGGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACCAACCAAAGGCTCACCTCGTGGTTTCTAAGGGCATTAATCTCTAGGGCTTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGCTGATGAGCGTGACAGAGCTAGCCGGGTATGTGGATCTCATTCCTTGGCATAGATTTGGGTATTGCGCATCCAATAATGAAATTTACAAAGCAATAACGGGGTACCAAAGGGTACATGTTCTAGATTTTAGTATAACCCATTGTATGCAATGGCCTACTTTTATAGATGGATTAGCGAAAAGTCCTGAAGGACCTCCTTCACTTAGAATCACGGTTCCATTTTGTAGACCACATGTACCCCCCTTGGTCAATGTATCAATACATGAGGTTGGTTTACGTTTAGGAAATTTCGCCAAGTTCAGAGATGTCCCTTTTGAATTCAATGTTATAGGAAACACAGGACCTTTAACACCTGCGGAATTGAGCGATGAATCAACTAGCTTTCATTTTGAAGCAATGTTAAGTCTCTTGAATCCTGCTACGCTAAATCTCAGGGAAGATGAAGCCTTGGTCATAAATTGCCAAAATTGGCTACGCTATTTGTCTGATGATAGAAAGGGAAGCCGCCAAAGTCTTTCACTTAGGGATGCCTTTTTGAATCTAATAAAAGGTCTTAACCCCCGGATTGTTCTCTTGGTTGACGAGGATTGTGATCTTAGTGTATCTAGTCTCACATCAAGAATCACCACATGCTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACCTTTTTGCCTAAAGATAGTGGTCAGAGGACAGAGTTTGAATCCGACATAGGCCAGAAGATTGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATAGAGAGGTTGGAGTGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTGGGTTACCTCAGTGTTCCATTTTGTGATGAAACTGTTAGGGAAGTTAAAGGTTTGCTAGATGAGCATGCTAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGCTAGTTCTCACATGGAAAGGAAACAGCTGTGTCTTTGCGACAGCTTGGGTCCCCTGTGAAATGAGGGATCATATTGGAATGGATGCAAGTCTGCCTTAA 1383 0.4447 MQVTSSHSHMKAELKGTSISFQNPTTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIYKAITGYQRVHVLDFSITHCMQWPTFIDGLAKSPEGPPSLRITVPFCRPHVPPLVNVSIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTPAELSDESTSFHFEAMLSLLNPATLNLREDEALVINCQNWLRYLSDDRKGSRQSLSLRDAFLNLIKGLNPRIVLLVDEDCDLSVSSLTSRITTCFNHLWIPFDALETFLPKDSGQRTEFESDIGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLSVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEMRDHIGMDASLP* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1157 460 PANTHER OS05G0500600 PROTEIN 11 446 - -
Pvu5g1157 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 446 IPR005202 -
Pvu5g1157 460 ProSiteProfiles GRAS family profile. 42 445 IPR005202 -
Pvu5g1157 460 Pfam GRAS domain family 52 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1157 Pvu-Chr5 32819795 32821727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1157 25 447 GRAS Transcription Factor Family AT3G49950 43.981 9.41e-118 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu5g1157 GRAS 3.3e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1157 - - gmx:100802093 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1157 5 32819795 32821727 Pvu5g1157 5 32819795 32821727 ECH