Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1151 ATGCACATGTTAGCGAAAGCACATAGTAAAGGGGATGGAAGCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAACGCCCAGCTTGATTCCTGCAAAGATGCGGATAAGCCAGTTCGCAAAGTTCCTGCCAAGGGATCGAAAAAAGGGTGTATGAAAGGTAAAGGGGGGCCTGAGAACTCGCGGTGTAACTACAGAGGTGTTAGGCAGAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCGAACAGAGGGAACAGGCTGTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCCTGTGCCCGTCTCAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCTGAGGAATCCTCCAAAGATTCTCCAGTGGCGAATCATTCTGGTTCCTCAATGGCAGTGTCTGCAAATGAATCCATGGTTTCCCCAAGTAACTCTGAGGGGGGAGAAGAAGAAGAAGAAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCTTAAGTGTAAAACATGAGAACGGGGAAGGTGAATCAGGGATAAGTTCATCCCCTCCTTCTTCTTCATAG 615 0.4797 MHMLAKAHSKGDGSKSLAKILAKWKEYNAQLDSCKDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPVANHSGSSMAVSANESMVSPSNSEGGEEEEEEEDVDMEPISLSLSVKHENGEGESGISSSPPSSS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1151 204 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Pvu5g1151 204 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Pvu5g1151 204 MobiDBLite consensus disorder prediction 163 177 - -
Pvu5g1151 204 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 185 - -
Pvu5g1151 204 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Pvu5g1151 204 MobiDBLite consensus disorder prediction 129 204 - -
Pvu5g1151 204 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Pvu5g1151 204 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Pvu5g1151 204 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Pvu5g1151 204 MobiDBLite consensus disorder prediction 129 162 - -
Pvu5g1151 204 MobiDBLite consensus disorder prediction 39 61 - -
Pvu5g1151 204 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Pvu5g1151 204 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Pvu5g1151 204 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1151 Pvu-Chr5 32566424 32568115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1151 10 127 AP2-EREBP Transcription Factor Family AT2G40350 63.115 4.49e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu5g1151 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1151 - - gmx:100499747 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1151 5 32566424 32568115 Pvu11g1110 11 12892620 12894683 PCT