Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1147 ATGAGAAGTGAAGAGGTGGTGTTGTCCTTCTCTCTTCTTCTTCTCTCGGTGCCGCTATTATGCTTCCAAATATGTTTGGGAGTTGATACTCTGAAGGGTACCCAGAGCATAACTGACTCCGGAAAACTTGTTTCATCAAACGCCACATTTGAGCTCGGCTTCTTTTCTCCTCCTGGTGTGAGTGGCGAGAAAAGATACCTGGGGATATGGTATCACAAGCTGGAACCACAAACAGTGGTGTGGGTTGCCAATAGAGATGACCCTGTTGCAGATTCTAGTGGAGTTTTTCGAATTGCGGAGGATGGAAATGTGGTCGTTGAATATGCATCCAAAAGCCTCTGGTCCTCCAAACTTGAACCATCCTCGTCCACAAATAGAACATTGAAGCTCCTAGATTCGGGGAATCTAGTACTAACAGATGACTCTGAAACGAGATGCCTGTGGGAAAGCTTCAAAAACCCAACAGACACGTTTCTTCTCGGCATGAAAATGGACGCGACTTTGTCGTTGACTTGTTGGAGAGACCCCGCTGACCCAGCCCCTGGGAGCTTCACCTTCAAGATGGGTCATCGTGAAACCTTGGTAGTGGAAAACCAATCGCAACTTTACTGGACGGAGTCACTGGATGGATCCGGTACAAAGATCTCTGGGTTCTTGGGCTCGGATACTTCATTACTCAAGAATTCAAGCAACTTGTCATGTCTATCATCAAAACCATACAACAAAAAGGAAAGGCTGTTAATGAATTCTAGCGGGGAGATACAGCTTCTGAAGTGGGACGAGGACGACAGGCAATGGGATAAAAAATCGTCGGAGCCAGCTAGTATGTGCGACGTATATGACCATTGCGGGAGCTTCGGCATCTGTGACGCAAATAATTTGAATTTCCTCACTTGCAAATGTTTGCCAGGATTCAGACCCAGGGATGAAGAAATCCGTGGCCAAGGGTGTGTGAGAAAATCAACGTCTTGTATTGATACGAATGTGACGTTCCTGAACTTAACCAACATAAAAGTGCGTGACCCAGACGAAATGCATGGATCGGAAACAGAAGCAGATTGTGAATCCTTATGCCGTAACATAACCATTACCAAGTGTCCTCAGTCCCAGTGCCAGGCATATTCATATAGTTCTAGAGCGGAGTTTGGTCGAGATGATGGTAACTCTACATGCAAGATCTGGAGGGGAAATTTATCCACTCTTGTAGTTAATGGTATAGGTGGTCGCAATCTTTCTGTCCTGTTTAAGAGATCAGATATAGAAGCAACTGCCAAATCGTGTGATCCTTGCGGTACATACGAGATTCCTTATCCGCTAAGCACTGGGCCAAACTGCGGAGACCCCACCTACAACAAGTTCAATTGTAACGAATTGACGGGCAACCTTACATTCACGATGCCGGGGGGAAACTCATACGAAGTTACTTGGATCGATGAAGATAAGAGAGTGTTTTACATTAAAGTAGATGATTCATATTCCTGTGGTTCCAGAAATCAAAATAAGACTCCTAAACTCCCATTCAGTTTAGCTGAGCCAGAGTGTTCCAAAATTGATGGAATGATTAAAATGAAATGGGCAGCAGCACCAGAACCGCCGTGTCGGAAGCCCCCAGACTGCGAGAATAGGCCCCATTCGACATGCATGGTAACAAGTGATGGAGGTCACAGGTGCCTTTGCGATTCACACTATAAGTGGAATCCCACAGTTATGATATGTGCCAAAGATTATGTAGATCTTTGA 1740 0.4534 MRSEEVVLSFSLLLLSVPLLCFQICLGVDTLKGTQSITDSGKLVSSNATFELGFFSPPGVSGEKRYLGIWYHKLEPQTVVWVANRDDPVADSSGVFRIAEDGNVVVEYASKSLWSSKLEPSSSTNRTLKLLDSGNLVLTDDSETRCLWESFKNPTDTFLLGMKMDATLSLTCWRDPADPAPGSFTFKMGHRETLVVENQSQLYWTESLDGSGTKISGFLGSDTSLLKNSSNLSCLSSKPYNKKERLLMNSSGEIQLLKWDEDDRQWDKKSSEPASMCDVYDHCGSFGICDANNLNFLTCKCLPGFRPRDEEIRGQGCVRKSTSCIDTNVTFLNLTNIKVRDPDEMHGSETEADCESLCRNITITKCPQSQCQAYSYSSRAEFGRDDGNSTCKIWRGNLSTLVVNGIGGRNLSVLFKRSDIEATAKSCDPCGTYEIPYPLSTGPNCGDPTYNKFNCNELTGNLTFTMPGGNSYEVTWIDEDKRVFYIKVDDSYSCGSRNQNKTPKLPFSLAEPECSKIDGMIKMKWAAAPEPPCRKPPDCENRPHSTCMVTSDGGHRCLCDSHYKWNPTVMICAKDYVDL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1147 579 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 19 460 - -
Pvu5g1147 579 Pfam S-locus glycoprotein domain 239 308 IPR000858 GO:0048544
Pvu5g1147 579 Pfam D-mannose binding lectin 78 166 IPR001480 -
Pvu5g1147 579 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Pvu5g1147 579 SMART blect_4 34 154 IPR001480 -
Pvu5g1147 579 ProSiteProfiles PAN/Apple domain profile. 324 419 IPR003609 -
Pvu5g1147 579 Gene3D - 26 153 IPR036426 -
Pvu5g1147 579 CDD B_lectin 34 154 IPR001480 -
Pvu5g1147 579 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 460 - -
Pvu5g1147 579 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 175 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1147 Pvu-Chr5 32463161 32468732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1147 427 509 Receptor kinase-like Gene Family AT5G02070 38.462 2.22e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1147 - - pvu:PHAVU_005G110800g 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1147 5 32463161 32468732 Pvu5g1147 5 32463161 32468732 ECH
Pvu5g1147 5 32463161 32468732 Pvu11g1119 11 13221922 13227123 PCT