Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1145 ATGAAGAACTGCGAGCTCTGCAAGGTTCCGGCTCGGACTTTTTGCGAGTCGGACCAGGCCAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGTGCCAACTTCCTCGTCGCCAGACACACGCGCACGCTCCTCTGCCACACCTGCCAGTCACTCACGCCCTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACCGTCTCCCTCTGCGAGAGGTGCGCCGGCGGAACCGCTGAACAAGGTCAGGAGAGCCATGGAGGCAATGACGACGACATAGACACAGACGAAGATGACTACGACGACGATGATGAGACCGACGACGAGGTCGCCGCCGACGAGGATGGAGACAACCAGGTTGTCCCTTGGTCCTCCGCGCCGCCGCCGCCTCCCTCGAGCTCTTCCAGTAGCGAAGAGTCGGTTAGCCGGTGCAACAACGCCGACGAGGATGTTTCGACCACATTCAAACGACGTCGTGAGGACAATGATTTCGAGTGTTCGAATTCGAATAATTGGGGATGTCAACAGAGCGATGTGGAGAGAGAAGGCTGGTTAGTTCGGTTGCGGCGGCGAACCGCCGCGAAAGGTAACGGTCTTGCTGTTGAGCGACGGAGTGGCAGAGCGGTGGCTCCCTACGGTTGTGATGATGATGATAGAGCCTCTGAAGACCTTTGA 669 0.5964 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHTCQSLTPWKASGAALGNTVSLCERCAGGTAEQGQESHGGNDDDIDTDEDDYDDDDETDDEVAADEDGDNQVVPWSSAPPPPPSSSSSSEESVSRCNNADEDVSTTFKRRREDNDFECSNSNNWGCQQSDVEREGWLVRLRRRTAAKGNGLAVERRSGRAVAPYGCDDDDRASEDL* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1145 222 MobiDBLite consensus disorder prediction 133 147 - -
Pvu5g1145 222 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Pvu5g1145 222 MobiDBLite consensus disorder prediction 148 163 - -
Pvu5g1145 222 CDD Bbox1_BBX-like 4 45 - -
Pvu5g1145 222 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Pvu5g1145 222 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 221 - -
Pvu5g1145 222 MobiDBLite consensus disorder prediction 76 176 - -
Pvu5g1145 222 PANTHER - 1 221 - -
Pvu5g1145 222 MobiDBLite consensus disorder prediction 88 113 - -
Pvu5g1145 222 SMART bboxneu5 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1145 Pvu-Chr5 32442660 32444100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1145 2 165 C2C2-CO-like Transcription Factor Family AT4G27310 44.949 1.14e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu5g1145 zf-B_box 9.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1145 - - gmx:100801024 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1145 5 32442660 32444100 Pvu5g1145 5 32442660 32444100 ECH
Pvu5g1145 5 32442660 32444100 Pvu11g1120 11 13259451 13260539 PCT