Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1142 ATGAGAAACCTAAGAGACTTGAGGTATGCCCTCACCACCGTTTCTGCTGATCAAAAACTCACTGGTGATCAAACTCTCGTCTCCGAAGGAGGGGTCTTCGAACTGGGTTTCTTCAAGCCAGGTGGTAATTTAGCTCTTTTAGATGGGTCTTCTAATCAAGTTTGGTCAACAAACACGAGTTCTCCCAGGTCAGGTTCTGTCGTGGAAGCTGTTTTACTAGATTCTGGGAATCTTGTGTTAAGAGATAGGCCTCATGATGATGCTTCTGAGCCTTTGTGGCAGAGTTTTGATCACCAGACGGACACGTTCCTTCCGGGTGGAAAAATTAAACTCAACAAGAAAACAAAGAAAGCTCAATACCTCACTTCATGGAAGAACTTGGAAGATCCTGCTACGGGTCTCTTCTCTCTGGAACTAGACCCTGAAGGCTCCACTGCTTATTTGATTACTTGGAACAAGACTGAACATTATTGGACAAGTGGCTCTTGGAATGGACACATTTTCAGTTTGGTTCCAGAAATGAGGTTGAATTATATATTCAATTTCTCCTTTGTGTCCAATGAGAACGAGAGCTATTTCACCTACTCCTTGTATAACTCTTCCATTGTATCTCGGTTATTCATAGATATCACGGGGCAGATCAAGCAACTCACGTGGTTGGAGAGTTTTCAGCAGTGGAACTTGTTTTGGTCACAGCCGAGACAACAGTGCGAGGTATATGCCTTTTGCGGCGCGTTTGGGAGTTGCACTGAGAACTCAATGCTGGGGCCTTGTAATTGCTTGAAGGGTTTTGAGCCAAAGTCACTGTCTGATTGGAATCTGGAGGATTACTCAGGAGGGTGCCAGAGGAAAACAAAGTTGCAATGTGAGAATTCCAATGCCTCCAACAGGGATAAGGTCGGGTTCCAAGAAATTCCCAACGTGGTATTACCTAAAGAGGCACAGTCTGTCGGCTCAGGGAATGCAGGAGAATGTCAATCAATCTGCTTGAGCATCTGCTCCTGCACAGCTTATGCATATGACAGTAACGGATGTTCAATTTGGGACGGCAACCTTCTGAACGTGCAACAGTTGTCTTCAGATGATAGTAGCGGAGAAACTTTGTATCTTAAACTTGCAGCATCTGAGCTTCATGCTGATAAAAGCAGTAAGGGGACGATTATTGGTATAGTTGTGGGAGTGGTTCTTGGCGTTGGGATTCTCTTGGCCATTCTTTGGTCAAGGAAGAGAATGTTGGTATCAGGAAAGGCTGCAGAGGGTTCGTTGGTGGTATATGGGTACAGAGATTTGCAAGATGCAACGAGAAATTTCTCTGAGAAATTGGGAGGAGGAGGGTTTGGTTCTGTTTTTAAAGGAACATTGGATGATTCCAGTGTGGTAGCAGTGAAGAAGTTGGAAAGTTTTAGCCAAAGAGAGAAACAGTTTCAAACCGAAATTCGAACAATAGGGACAATACAACATGTTAATCTTGTCAGACTCCATGGATTCTGCTCTGAAGGCACCAAAAAGCTGCTAGTTTATGAATACATGCCAAATGGCTCCTTGGATTTGCACTTGTTCCAGAACAAGAACTTCGTGGTATTGGACTGGAAAACGAGATACCAAATTGCTTTGGGAATAGCAAGGGGATTAGCTTACCTTCATGAGAAATGCAAAGACTGTATTATACACTGTGACGTAAAGCCAGAAAATATTCTCCTAGATGCTGATTTTTGTCCCAAGATTGCAGACTTTGGCCTGGCTAAGCTTGTAGGAAGGGATTTCAGCAGGTTCCTCGCAACAGTTAGAGGAACAAAAAACTATCTTTCTCCAGAATGGATTTCTGGGGTGCCTATCACAGCCAAAGCCGACGTGTACAGCTATGGAATGATGCTTTTTGAGTTTGTGTCAGGTAGGAGGAACTCTGGTGAGCTATCTGATTGTGATGAAGATGACCAATTTACGTTCTTTCCTACCAGGGCAGCAAATATAGTTGCCCAAGGTGGCAATGTTCTTAGCCTTTTAGATCCTTCTTTGGAACAAAATGCTGATGCCGAGGAGGTGACTCGAATGGCAACCGTTGCTTCCTGGTGTATCCAAGAGAATGATACTCACAGGCCAACCATGGGTCAGGTAGTTCATATCCTTGATGGGATCTTGGACGTGAATTTACCTCCAATTCCAACATTTCCTCAAAACTAG 2181 0.4397 MRNLRDLRYALTTVSADQKLTGDQTLVSEGGVFELGFFKPGGNLALLDGSSNQVWSTNTSSPRSGSVVEAVLLDSGNLVLRDRPHDDASEPLWQSFDHQTDTFLPGGKIKLNKKTKKAQYLTSWKNLEDPATGLFSLELDPEGSTAYLITWNKTEHYWTSGSWNGHIFSLVPEMRLNYIFNFSFVSNENESYFTYSLYNSSIVSRLFIDITGQIKQLTWLESFQQWNLFWSQPRQQCEVYAFCGAFGSCTENSMLGPCNCLKGFEPKSLSDWNLEDYSGGCQRKTKLQCENSNASNRDKVGFQEIPNVVLPKEAQSVGSGNAGECQSICLSICSCTAYAYDSNGCSIWDGNLLNVQQLSSDDSSGETLYLKLAASELHADKSSKGTIIGIVVGVVLGVGILLAILWSRKRMLVSGKAAEGSLVVYGYRDLQDATRNFSEKLGGGGFGSVFKGTLDDSSVVAVKKLESFSQREKQFQTEIRTIGTIQHVNLVRLHGFCSEGTKKLLVYEYMPNGSLDLHLFQNKNFVVLDWKTRYQIALGIARGLAYLHEKCKDCIIHCDVKPENILLDADFCPKIADFGLAKLVGRDFSRFLATVRGTKNYLSPEWISGVPITAKADVYSYGMMLFEFVSGRRNSGELSDCDEDDQFTFFPTRAANIVAQGGNVLSLLDPSLEQNADAEEVTRMATVASWCIQENDTHRPTMGQVVHILDGILDVNLPPIPTFPQN* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1142 726 ProSiteProfiles Protein kinase domain profile. 435 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1142 726 PIRSF SRK 2 43 IPR024171 GO:0004674
Pvu5g1142 726 PIRSF SRK 39 725 IPR024171 GO:0004674
Pvu5g1142 726 Pfam S-locus glycoprotein domain 158 268 IPR000858 GO:0048544
Pvu5g1142 726 Gene3D Phosphorylase Kinase; domain 1 405 509 - -
Pvu5g1142 726 SUPERFAMILY Protein kinase-like (PK-like) 422 721 IPR011009 -
Pvu5g1142 726 Gene3D Transferase(Phosphotransferase) domain 1 510 716 - -
Pvu5g1142 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Pvu5g1142 726 ProSitePatterns Protein kinases ATP-binding region signature. 441 464 IPR017441 GO:0005524
Pvu5g1142 726 Gene3D - 12 130 - -
Pvu5g1142 726 Pfam D-mannose binding lectin 40 125 IPR001480 -
Pvu5g1142 726 SMART blect_4 17 99 IPR001480 -
Pvu5g1142 726 CDD PAN_AP_plant 285 373 - -
Pvu5g1142 726 ProSiteProfiles Bulb-type lectin domain profile. 11 150 IPR001480 -
Pvu5g1142 726 SUPERFAMILY alpha-D-mannose-specific plant lectins 23 164 IPR036426 -
Pvu5g1142 726 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 9 41 - -
Pvu5g1142 726 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 42 724 - -
Pvu5g1142 726 SMART serkin_6 435 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1142 726 Pfam PAN-like domain 299 355 IPR003609 -
Pvu5g1142 726 CDD B_lectin 17 98 IPR001480 -
Pvu5g1142 726 SMART ntp_6 297 372 IPR003609 -
Pvu5g1142 726 CDD STKc_IRAK 441 712 - -
Pvu5g1142 726 ProSiteProfiles PAN/Apple domain profile. 289 373 IPR003609 -
Pvu5g1142 726 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 9 41 - -
Pvu5g1142 726 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 42 724 - -
Pvu5g1142 726 Pfam Protein kinase domain 438 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1142 Pvu-Chr5 32389082 32391684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1142 387 719 Receptor kinase-like Gene Family AT5G20050 39.835 2.47e-75 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pvu5g1142 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1142 - - vra:106760674 1258.43