Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1138 ATGGTGAAATGCACCTTTTCTGAAAAAAGTAGGCTTAGGAAAGGAACATGGACACCAGAGGAAGACAAAAAATTGAGTGCCTATGTTACCAGATATGGTCACTGGAATTGGAACCTACTCCCCAAGTTTGCAGGTCTTGAGAGGTGTGGAAAAAGTTGCAGGCTAAGGTGGCTGAATTACTTGAGGCCAAATATCAAAAGAGGAAACTACACTAAAGAAGAAGATGAGACTATTATCAAACTTCTCCAAAGTCTCGGTAACAGATGGTCTGTGATTGCTGCTCAGCTGCCAGGAAGAACAGACAATGAAATAAAGAATTATTGGCACACCAATCTCAAGAAACGATTTCAACCTCTCAAACCTCAACTTTCCCACTCAAAGGATGAATCACCTGCTGATGAACAAGTACCAACTTCTCAATCCACCGATTCATGCACAACAGCTACATCCCCGTCCCAACTCTCCATAACTACTGATACCAAAGAAAACAAGTTTGATAACATTTCTGAGGATGATGATTTTTCTTTTGTGGATGCTTACCAACTACAGCCTGTGATCGAAAGCATCTGGTTGGAACCATACATGGTTGACATATCTTGCATTGCTTCTGCTTTCTTGCCTGAACCCGATTACTTCAGCCCTGCTTCTGACATAGAACTTGTTTCTGATATTGAACTTTGGGATCACAGTAATGAATAG 699 0.412 MVKCTFSEKSRLRKGTWTPEEDKKLSAYVTRYGHWNWNLLPKFAGLERCGKSCRLRWLNYLRPNIKRGNYTKEEDETIIKLLQSLGNRWSVIAAQLPGRTDNEIKNYWHTNLKKRFQPLKPQLSHSKDESPADEQVPTSQSTDSCTTATSPSQLSITTDTKENKFDNISEDDDFSFVDAYQLQPVIESIWLEPYMVDISCIASAFLPEPDYFSPASDIELVSDIELWDHSNE* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1138 232 CDD SANT 69 112 IPR001005 -
Pvu5g1138 232 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu5g1138 232 CDD SANT 16 61 IPR001005 -
Pvu5g1138 232 Gene3D - 69 141 - -
Pvu5g1138 232 MobiDBLite consensus disorder prediction 133 162 - -
Pvu5g1138 232 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu5g1138 232 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu5g1138 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu5g1138 232 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu5g1138 232 SMART sant 13 63 IPR001005 -
Pvu5g1138 232 SMART sant 66 114 IPR001005 -
Pvu5g1138 232 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 199 - -
Pvu5g1138 232 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu5g1138 232 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 199 - -
Pvu5g1138 232 MobiDBLite consensus disorder prediction 121 164 - -
Pvu5g1138 232 Gene3D - 14 66 - -
Pvu5g1138 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1138 Pvu-Chr5 32274219 32278392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1138 1 199 MYB Transcription Factor Family AT2G31180 49.246 1.86e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g1138 Myb_DNA-binding 4.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1138 K09422 - gmx:100810385 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1138 5 32274219 32278392 Pvu11g1127 11 13856644 13861601 PCT
Pvu11g1126 11 13657402 13658994 Pvu5g1138 5 32274219 32278392 PCT