Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1137 ATGGCGAGAACCCCTTGTTGCGACAAAAATGGGCTCAAGAAAGGATCATGGACACGAGAGGAAGACAAGAAGTTGATCGCTTATGTCACCAAGTACGGCCACTGGAATTGGCGCCTGCTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGCAGGCTGAGATGGCTGAACTATCTAAGGCCAGATGTTAAAAGAGGGAATTTTAGTGATGAGGAAGAAGAAATCATTGTGAGACTTCACGAAAAGCTTGGTAATAGATGGTCAACAATTGCTGCTGAACTGCCAGGGAGGACTGATAACGAGATAAAAAACCACTGGCACACCGTCCTCAAGAAGCGTTTTGAACAAAAAGCAGAAGCTAAAAGCGGAATTGGAAAAGAATCTTCTATTTCCAGGTCCTTTGAGACCGTATCAGAGAATTACAGTGACCCAGATGCAACAAATGCTTCCCCTGTTGCACCAGCTGCCGCTACAAATCATGAAAGTGATGATGGTCTTTCCTTTTTTGATGCATACTCAGAGCCTGTGTCTGCAGATTTCTGGACAGAACCTTATTTAATTGACAACTCCTATGTTCCACCCGAGTTTGAACCTGTTTACTTTAGTCCCATGTACGATGTAGAACTTTGGAACCAGAATGAGATGTATCTGCAGGAATGTGAGGGCTTATTCCAATGA 684 0.4444 MARTPCCDKNGLKKGSWTREEDKKLIAYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPDVKRGNFSDEEEEIIVRLHEKLGNRWSTIAAELPGRTDNEIKNHWHTVLKKRFEQKAEAKSGIGKESSISRSFETVSENYSDPDATNASPVAPAAATNHESDDGLSFFDAYSEPVSADFWTEPYLIDNSYVPPEFEPVYFSPMYDVELWNQNEMYLQECEGLFQ* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1137 227 CDD SANT 69 112 IPR001005 -
Pvu5g1137 227 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu5g1137 227 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu5g1137 227 CDD SANT 16 61 IPR001005 -
Pvu5g1137 227 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu5g1137 227 SMART sant 66 114 IPR001005 -
Pvu5g1137 227 SMART sant 13 63 IPR001005 -
Pvu5g1137 227 MobiDBLite consensus disorder prediction 139 157 - -
Pvu5g1137 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu5g1137 227 Gene3D - 69 135 - -
Pvu5g1137 227 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu5g1137 227 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 144 - -
Pvu5g1137 227 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 144 - -
Pvu5g1137 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu5g1137 227 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu5g1137 227 MobiDBLite consensus disorder prediction 139 161 - -
Pvu5g1137 227 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1137 Pvu-Chr5 32159234 32162426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1137 1 226 MYB Transcription Factor Family AT2G31180 45.690 8.64e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g1137 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1137 K09422 - gmx:100815765 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1137 5 32159234 32162426 Pvu11g1129 11 13946276 13947768 PCT
Pvu11g1127 11 13856644 13861601 Pvu5g1137 5 32159234 32162426 PCT