Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1136 ATGAGAACCCCTTCCTGGGACAGTAGTGGACTTAAGAAAGGCACTTGGACTCAAGAGGAAGATAGGAAGCTCGTAGCTTATGTCACTCGATATGGGACTTGGAATTGGCGCCAACTCCCAAGATTTGCAGGTCTGACAAGGTGTGGAAAGAGCTGCAGACTTAGGTGGCTCAATTATCTCAGACCCAACATAAAAAGAGGAAACTTTACTGAGAAAGAAGAAGAAACTATAATCAAACTGCACGAAGAGCTGGGTAACAAATGGTCTGTTATTGCCACTCATTTACCCGGAAGAACAGATAACGAAATAAAGAACCAGTGGCACACCACTCTGAAAAAGCGTTTTGGAAAGAAGGCAGTTCATACGAAAACAAATGTGAAAGCCGCAAAATCAAACAGTTCTGTGTCTAACCAAGACAAGGATTCCATTCAGAACAATGGTTTCTTCCACGAAGATTCTCCTTCTCCAACAATTTCTAGAGCCTCTGATCCTGACCCTTTGTCCCTGGAAGTATCCTCAATCGAGTTCTCGTCCACAACCTCAGATTATACCACTAACGATAATTTGTTAATGGAAGAAGGGTTCGATTTTCTGTATGCATGCTTAGAGGATTTGAACCAGAATATTTCGACAGAGTCGTTACACATTTCTCACGGCACAATACAAAACAATGGTATTGAAAATTTTCATGGTTCAGATCCGATGACCATGGAACATGTTTGGGCAGAGTCTCCTCTGTCGTCATATAATGAAAATGTGGTTGTGGAAAATGATGATTTTGGGTTTCTAGAAGCAATACAACCAATAACTGAAAATTCTTGGAGGGAAGCATTCGTGGCAGACACGTCTCTTATTCCGAACGAATTTCTTGTTCCTTTGGTGAACGAATCCGAGTCGTACTTTTCTTCTACGTATGATGCGAGAGATATTTGGTGTCTCCGCGATAATTCTCATGATTTAGACGTCAACTTATTTCAATAA 981 0.4118 MRTPSWDSSGLKKGTWTQEEDRKLVAYVTRYGTWNWRQLPRFAGLTRCGKSCRLRWLNYLRPNIKRGNFTEKEEETIIKLHEELGNKWSVIATHLPGRTDNEIKNQWHTTLKKRFGKKAVHTKTNVKAAKSNSSVSNQDKDSIQNNGFFHEDSPSPTISRASDPDPLSLEVSSIEFSSTTSDYTTNDNLLMEEGFDFLYACLEDLNQNISTESLHISHGTIQNNGIENFHGSDPMTMEHVWAESPLSSYNENVVVENDDFGFLEAIQPITENSWREAFVADTSLIPNEFLVPLVNESESYFSSTYDARDIWCLRDNSHDLDVNLFQ* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1136 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pvu5g1136 326 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pvu5g1136 326 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 225 - -
Pvu5g1136 326 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pvu5g1136 326 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pvu5g1136 326 CDD SANT 68 111 IPR001005 -
Pvu5g1136 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 225 - -
Pvu5g1136 326 MobiDBLite consensus disorder prediction 125 162 - -
Pvu5g1136 326 CDD SANT 15 60 IPR001005 -
Pvu5g1136 326 Gene3D - 67 143 - -
Pvu5g1136 326 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pvu5g1136 326 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pvu5g1136 326 MobiDBLite consensus disorder prediction 118 166 - -
Pvu5g1136 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pvu5g1136 326 SMART sant 12 62 IPR001005 -
Pvu5g1136 326 SMART sant 65 113 IPR001005 -
Pvu5g1136 326 Gene3D - 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1136 Pvu-Chr5 32024860 32026313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1136 2 188 MYB Transcription Factor Family AT2G31180 51.042 7.26e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g1136 Myb_DNA-binding 6.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1136 K09422 - gmx:100811124 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1136 5 32024860 32026313 Pvu11g1130 11 14035692 14036992 PCT
Pvu11g1129 11 13946276 13947768 Pvu5g1136 5 32024860 32026313 PCT