Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1135 ATGGATTTTAACCTCGAAAACCCTCTTGGAAACTTCCACGACCTTCCATGGGATGCTCTCCCTTCCCTCTTCCTCATCGAATCCGACCACATCCCTCCACCCAATTACTGTCAAACTCTCAAAGCCAGCGACTTCGACATCTCTGTTAGAAGAAATGTTGTCTCTTTGATTTCACAGTTGTCCTGCACTTTCGATCCAGTTCTTCCTTACCTAGCTATCAACTACTTGGATCGCTTCCTCGCTAACCAAGGAATATTGCAACCAAAGCCATGGGCAAACAAGCTTCTTGCAATATCTTGCTTTTCTTTAGCGGCCAAGATGTTGAAAGCAGAATACTCTGCCACTGACGTCCAGGTTCTGCTGAATCATGGTGAAGGAGGTGTAGTTTTTGAGACACAAACAGTTCAAAGAATGGAGGGCATTGTCTTGGGGGCTCTCCAGTGGCGAATGCGTTCGATCACCCCCTTTTCTTTCATTCCCTTCTTCGTGGATTTGTTCAGGCTCAAAGACCCGGCATTTAGGCAGGTTTTGAAGGATCGAGCATCTGAAATCATTCTAAAGTCACAAAGAGAGATAAAGGTCTTGGAATTCAAGCCATCTATAGTTGCTGCGTCAGCCCTTCTGTATGCTTCACATGAGTTGTTTCCCTTTCAATATCCATGCTTCTTAAGAGCAATATCCGACTGTTCGTATGTTAACAAAGAAACTGTGGTGCAATGTTATAATGTGATACAGGACATAGCCAGGGAGGAGTACGAATCTGTGTTGAATATAAATTCAACTTCAGACACACCGGTTAATGTGTTAGACGAACATTTTCTAAGCTTGGAAAGTGAAAAAACCAACGGGGTGATACAAGAGCAGGAGTTCAAAAGAAGGAAAATCACCGATTATGGCAACAAACACACGGTCCCGTTTTCTCATTTTCATCAATGCTGA 939 0.4356 MDFNLENPLGNFHDLPWDALPSLFLIESDHIPPPNYCQTLKASDFDISVRRNVVSLISQLSCTFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAISCFSLAAKMLKAEYSATDVQVLLNHGEGGVVFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVDLFRLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSIVAASALLYASHELFPFQYPCFLRAISDCSYVNKETVVQCYNVIQDIAREEYESVLNINSTSDTPVNVLDEHFLSLESEKTNGVIQEQEFKRRKITDYGNKHTVPFSHFHQC* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1135 312 SUPERFAMILY Cyclin-like 13 150 IPR036915 -
Pvu5g1135 312 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 299 - -
Pvu5g1135 312 Gene3D - 22 242 - -
Pvu5g1135 312 PANTHER CYCLINS 5 299 IPR039361 -
Pvu5g1135 312 SMART Cyclin_C_2 153 268 IPR004367 -
Pvu5g1135 312 Pfam Cyclin, C-terminal domain 153 251 IPR004367 -
Pvu5g1135 312 SMART cyclin_7 157 246 IPR013763 -
Pvu5g1135 312 SMART cyclin_7 51 144 IPR013763 -
Pvu5g1135 312 CDD CYCLIN 50 143 IPR013763 -
Pvu5g1135 312 SUPERFAMILY Cyclin-like 134 249 IPR036915 -
Pvu5g1135 312 Pfam Cyclin, N-terminal domain 27 150 IPR006671 -
Pvu5g1135 312 CDD CYCLIN 153 244 IPR013763 -
Pvu5g1135 312 Gene3D - 33 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1135 Pvu-Chr5 31982662 31984757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1135 1 296 Core Cell Cycle Gene Families AT4G03270 45.161 1.53e-81 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1135 K18812 - gmx:100799951 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1135 5 31982662 31984757 Pvu5g1135 5 31982662 31984757 ECH
Pvu5g1135 5 31982662 31984757 Pvu11g1132 11 14156572 14159312 PCT