Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1110 ATGGAGGTTGTATTGGCGTCGTCGTCGGTTGACGGCGGAATAGGGTGCTGGGACCTTCACACCGGCGCGGAGCAGCTCCGCTACAAATCTTGCTTATCCCCTTCTCACGGCCTTATCTTCGTCGGTTCTCGCTTCATCGCCTCCTCTCAGCTTCGAGAAACTTCAGCAACATCTGGTTCTGTTCTCTTCTGGTCCTGGTCCAAGAGCTTTCCTGCTGAACCTATTAAGCCCCTTGCTTCTAATCACCCGGGAACCTTCGTTGTTGGTGGAGCTTCGTCTGGTGATATTTACTTGTGGGAAGTTGAAACCGGTAGATTGCTTAAGAAGTGGCGTGCACATTTTAGGGCGGTTACTTGTCTGGTTTTTTCTGAAGATGACTCGCTGTTGATATCTGGTTCTGAAGATGGAACCGTAAGAGTTTGGTCTCTCTTTATGATATTCGATGAGTTCATAGGGCAGCAGGCAAATAATCTTTATGAGTATAGTTTTACAGGACACACCCTGCGCGTGACTGATGTTGTTATTGGTAATGGAGGGTGCAATGCAATTATTGTGTCAGCTTCAGAGGATCGAACTTGCAAGGTATGGAGCTTATCTAGGGGAACACTACTAAGAAATAAAGTATTCCCTTCAGTTATTGATTCCATTGTATTGGATCCAGCTGAGCACGTCTTTTATGCTGGCAGTAGAGATGGAAAGATATATATTGTTGCACTTAACACTGAAAGCGTTGCTACTAATAATTGTGGGATGCATATCATTGGTTCTTTTTCTAACCACAGCAAGACAGTTACTTGCTTAGCATATGGCATGAGTGAGAATTTGTTAATATCTGGGTCAGAGGATGGAATGGTTCGTGTTTGGAATGCAAGAACTCGTAACATTGTCCGCATGTTCAAACATGCTAAAGGGCCTGTAAATAATATTCTCGTTGTTAGACGAGAAAACTCTACTAATCACATATCTTCTAATGTACAAACATCATCAAGAAAGCAAGGGGCTAATTTACCCCCTCCATTGGAAAAATATGCAAATTCAATAGATGAAGACTCGGATATGAGCACTATGGTCAGTCTTGGGGGTGGAAGCAGTTCTGTGGTTCCTTCATACATCAGTTCTAGTCTGATATCTAATTACATTAAGGAACTTCAGCATCAAGGGTCATCTGCTGCTTCTGAAATGGAGACGGAGAAACTAAAACATGATTACCAAAGGTCAATGCAAATGACTAACCAATGGAAGAAAATGTATGAAAACTTAAATAAATTTTGTGTACAAGAACTGTTGGATGGCAGTCAAGCTACAACCTTAGATGAAAATCATAATTAA 1329 0.4206 MEVVLASSSVDGGIGCWDLHTGAEQLRYKSCLSPSHGLIFVGSRFIASSQLRETSATSGSVLFWSWSKSFPAEPIKPLASNHPGTFVVGGASSGDIYLWEVETGRLLKKWRAHFRAVTCLVFSEDDSLLISGSEDGTVRVWSLFMIFDEFIGQQANNLYEYSFTGHTLRVTDVVIGNGGCNAIIVSASEDRTCKVWSLSRGTLLRNKVFPSVIDSIVLDPAEHVFYAGSRDGKIYIVALNTESVATNNCGMHIIGSFSNHSKTVTCLAYGMSENLLISGSEDGMVRVWNARTRNIVRMFKHAKGPVNNILVVRRENSTNHISSNVQTSSRKQGANLPPPLEKYANSIDEDSDMSTMVSLGGGSSSVVPSYISSSLISNYIKELQHQGSSAASEMETEKLKHDYQRSMQMTNQWKKMYENLNKFCVQELLDGSQATTLDENHN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1110 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 143 IPR001680 GO:0005515
Pvu5g1110 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 206 IPR001680 GO:0005515
Pvu5g1110 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 143 - -
Pvu5g1110 442 Pfam WD domain, G-beta repeat 105 142 IPR001680 GO:0005515
Pvu5g1110 442 Pfam WD domain, G-beta repeat 254 289 IPR001680 GO:0005515
Pvu5g1110 442 Pfam WD domain, G-beta repeat 161 197 IPR001680 GO:0005515
Pvu5g1110 442 PRINTS G protein beta WD-40 repeat signature 129 143 IPR020472 -
Pvu5g1110 442 PRINTS G protein beta WD-40 repeat signature 184 198 IPR020472 -
Pvu5g1110 442 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Pvu5g1110 442 PANTHER WD REPEAT-CONTAINING PROTEIN 18 1 428 - -
Pvu5g1110 442 Gene3D - 1 210 IPR015943 GO:0005515
Pvu5g1110 442 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Pvu5g1110 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 298 IPR001680 GO:0005515
Pvu5g1110 442 PANTHER WD-REPEAT PROTEIN 18 1 428 IPR045227 -
Pvu5g1110 442 Gene3D - 211 367 IPR015943 GO:0005515
Pvu5g1110 442 SUPERFAMILY WD40 repeat-like 56 308 IPR036322 GO:0005515
Pvu5g1110 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 292 - -
Pvu5g1110 442 SMART WD40_4 103 142 IPR001680 GO:0005515
Pvu5g1110 442 SMART WD40_4 200 238 IPR001680 GO:0005515
Pvu5g1110 442 SMART WD40_4 156 197 IPR001680 GO:0005515
Pvu5g1110 442 SMART WD40_4 250 289 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1110 Pvu-Chr5 31523572 31531511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1110 73 321 Eukaryotic Initiation Factors Gene Family AT2G46280 22.088 3.58e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1110 K14829 - gmx:100791195 724.931