Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1086 ATGTCGGTTGGGGAAACTGCTTGTTCATATGCATCTCTCATCCTTCACGATGAAGGAATCGCTGTCACTTCCGACAATATCGTCACCTTGTTGAAATCGGCCAAGGTTCAAGTCGATTCTTTTTGGCCTACTTTGTTTGCTAAGCTTGCCGCGAAGAAAAATCTCGGCGATCTGATAGCAAATGCTGCAGGAGGTGGGGCACCAGTTGCTGTTGCAGCTGCACCAGTTGCTGCTGCTGCAGGTGGAGGTGCTGCCGCCGCCCCTGCTGCTGAGGAGAAAAAGAAGAACCTGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTCGATTAGGGACGTTTTCCAATATCATGTCAAATTTTGTGGTTCTTTAACTTTCCTTATTGATATTTTAGGTTTTCTATCTGTGCTGGTTATTTATATTTGTATAAGACTTGGTTTTGTAGTGCTATGA 456 0.4474 MSVGETACSYASLILHDEGIAVTSDNIVTLLKSAKVQVDSFWPTLFAKLAAKKNLGDLIANAAGGGAPVAVAAAPVAAAAGGGAAAAPAAEEKKKNLKKRVMMIWDSACSIRDVFQYHVKFCGSLTFLIDILGFLSVLVIYICIRLGFVVL* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1086 151 Gene3D - 1 62 IPR038716 -
Pvu5g1086 151 Pfam 60s Acidic ribosomal protein 22 96 - -
Pvu5g1086 151 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 118 - -
Pvu5g1086 151 Hamap 50S ribosomal protein L12 [rpl12]. 6 96 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pvu5g1086 151 CDD Ribosomal_P1 5 61 - -
Pvu5g1086 151 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1086 Pvu-Chr5 31137049 31138536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1086 1 98 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 50.000 1.61e-28 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1086 K02942 - gmx:100791962 107.071