Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1081 ATGGCCTTAGACCAGTATTTCGAGGACATTGTGCCCCAGTTGGATTCCTTTGAAGATAAATCATCTCACGAAACATGGAAATGTGCTGGTGATGATGATAGTGCAGATTCGGATAAAAAAGCCTCCAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCATGCATTTACAAATGGCTTAACTTCCGTAGTGCCTCCTCTGAAAATGAAGAGAACCAACAATGTCCAGTATGCAAATCAGAAATCTCAGAGTCATCACTTGTTCCACTATATGGCCCTGACCGAACCACACTACCTTCTAAAGGCAAAGGTCACCAAGTAGGGATTGTGATACCAAGAAGACCCCTTGGTCCTTCATGGCTGACCAACTCATCAAGATCACATGATTCTGAAGCTGTTTCCCGACATACTTCTCATGTTTATCACCGCCATTATCCGAATCATCCTCAACAGTTCAACTCAATTTCTGGCAGTTACCCTTCATCAATGTTCAACACTGGTGGTTCACTAGCTAATGCATTTGATACAACATATGGAATCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAGATGACTAACGTATACACATACCCGAATTCATATGATCTTTCAGGGAGCAGTAATCCAAGGGTCAGAAGGCACTTAATGCAAGTTGATAGGTCACTCAGTAGAATCACATTTTTCCTCCTTTGTTGCATAGTTTTTTGTCTTCTCTTATTCTGA 777 0.4247 MALDQYFEDIVPQLDSFEDKSSHETWKCAGDDDSADSDKKASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFRSASSENEENQQCPVCKSEISESSLVPLYGPDRTTLPSKGKGHQVGIVIPRRPLGPSWLTNSSRSHDSEAVSRHTSHVYHRHYPNHPQQFNSISGSYPSSMFNTGGSLANAFDTTYGIFGEMIYARVFGNQMTNVYTYPNSYDLSGSSNPRVRRHLMQVDRSLSRITFFLLCCIVFCLLLF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1081 258 SUPERFAMILY RING/U-box 43 106 - -
Pvu5g1081 258 Pfam Zinc finger, C3HC4 type (RING finger) 47 93 IPR018957 GO:0046872
Pvu5g1081 258 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Pvu5g1081 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 107 IPR013083 -
Pvu5g1081 258 SMART ring_2 47 93 IPR001841 -
Pvu5g1081 258 ProSiteProfiles Zinc finger RING-type profile. 47 94 IPR001841 -
Pvu5g1081 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 258 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pvu5g1081 258 CDD RING-HC_AtRMA_like 45 95 - -
Pvu5g1081 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1081 Pvu-Chr5 31078090 31080739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1081 31 258 C3H Transcription Factor Family AT4G28270 35.443 1.25e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1081 K10666 - gmx:100785491 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1081 5 31078090 31080739 Pvu5g1081 5 31078090 31080739 ECH
Pvu11g1176 11 15642200 15645563 Pvu5g1081 5 31078090 31080739 PCT