Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1080 ATGACACTTGACACCTGCAAACAACTCATGAATCTTTCAATTAGGGAGTTAACAAGGTCACTTAATGGAATAAGCGAGTTTGAGTTGATAAATGTTGAGAAAATCCTCATGAATTTGAAAGTTTGGCTTAGTGGTGCAATTACATACCAAGACACTTGCTTGGATGGGTTTGAGAACACCACTAGTGAAGCTGGTAAAAAGATGAAGGATTTATTAATGATAGGCATGGAAATGAGTAGCAATGTTCTTGCCATTGTAACAGAATTGGCTGATACTATTACAAATTCGAATGTCACAAACTTACTCGGGCATCGCCACCTTCAAGGTTCAGAGTCACCCTCATGGAATGATCATCACAGACTACTCAATGAAAATGCAAGTCTAGTTAATCACAAGCCTAATGTGACGGTAGCCAAAGATGGTAATGGAGATTTCAAAAACATCAATGAGGCACTGAAGCAAGTTCCTGAGAAAAATAAAAGGCCATTTGTTATCTACATCAAAGAGGGCATCTACCAAGAGTATGTTCAAGTTACAAAGGATATGACTCACGTGGTTTTCATTGGTGATGGTGGGAAAAAAACACGAATAACGGGCAACAAAAACTTCATTGATGGAATCAACACTTATAAAACTTCCACAATTGCTATTCAAGGAGATTACTTTGTGGCCATCAACATGGGATTTGAGAATTTTGCTGGACCTCAAAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTATCTTCTACAATTGCTCAATGGATGGGTATCAAGACACACTTTATGTGCACACCATGCGTCAATTCTATAGGGACTGCACCATTTCAGGTACCATCGACTTTGTGTTTGGAAATGCACTTGCTGTTTTTCAAAATTGCACTTTTGTGGTCCGAAAGCCATTGAAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAGAAACAACAACCATCTGGAATAGTAATCCAAGGGGGCTCCATTGTGTCTGACCCTGAGTTTTACTCAATAAGATTTGAAAATAAAGCTTACCTAGCTCGTCCTTGGAAGAATTACTCTAGGACCATTATCATGGACACTTACATTGATGACTTGATTCATGCTGATGGGTATTTGCCATGGCAAGGGTTAGAAGGCCCTTCTGGTATGGATACTTGCTTTTATGCCGAGTATCACAACACTGGCCCCGGTTCAAACAAATCCAAACGTGTGCATTGGTCTGGGATTTGGAATCTAAATTCAAAAGCTATACACTGGTTTTCACCTTCCAAGTTCTTTCATGGAACTGACTGGATTCATGTTACTGGGATTCCTTGCTTCCCTGGCATACCCACACACTATAGGCACAAGAAAATGATACTTAAATGGTGA 1383 0.3984 MTLDTCKQLMNLSIRELTRSLNGISEFELINVEKILMNLKVWLSGAITYQDTCLDGFENTTSEAGKKMKDLLMIGMEMSSNVLAIVTELADTITNSNVTNLLGHRHLQGSESPSWNDHHRLLNENASLVNHKPNVTVAKDGNGDFKNINEALKQVPEKNKRPFVIYIKEGIYQEYVQVTKDMTHVVFIGDGGKKTRITGNKNFIDGINTYKTSTIAIQGDYFVAINMGFENFAGPQKHQAVALRVQADKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPLKNQQCIVTAQGRKEKQQPSGIVIQGGSIVSDPEFYSIRFENKAYLARPWKNYSRTIIMDTYIDDLIHADGYLPWQGLEGPSGMDTCFYAEYHNTGPGSNKSKRVHWSGIWNLNSKAIHWFSPSKFFHGTDWIHVTGIPCFPGIPTHYRHKKMILKW* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1080 460 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 89 IPR035513 -
Pvu5g1080 460 ProSitePatterns Pectinesterase signature 1. 159 178 IPR018040 -
Pvu5g1080 460 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 90 IPR035513 -
Pvu5g1080 460 SUPERFAMILY Pectin lyase-like 132 444 IPR011050 -
Pvu5g1080 460 Pfam Pectinesterase 134 432 IPR000070 GO:0030599|GO:0042545
Pvu5g1080 460 ProSitePatterns Pectinesterase signature 2. 278 287 IPR033131 -
Pvu5g1080 460 Gene3D - 131 448 IPR012334 -
Pvu5g1080 460 PANTHER PECTINESTERASE 1 446 - -
Pvu5g1080 460 CDD PMEI-like_3 1 90 - -
Pvu5g1080 460 Pfam Plant invertase/pectin methylesterase inhibitor 2 85 IPR006501 GO:0004857
Pvu5g1080 460 PANTHER PECTINESTERASE 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1080 Pvu-Chr5 31057092 31058777 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1080 1 447 Carbohydrate Esterase AT3G05610 50.334 6.82e-169 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1080 K01051 - gmx:100803527 830.091