Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1067 ATGGATCAGCAACAGGAAAATCAACCTTCTTCAACCAGAGTCGACAGAAAGATTGTAGAGAAAAACAGGCGAAACCATATGAAGAATCTTTATTCTGAACTCAACTCTCTTCTCCCTAGTTATAATCCCAAGCAAGTGGTGGCGCTGCCTGATCAAATAGACGAGGCAACGGAGTACATAAAAAGCCTAGAGGCAAAAGTTAGGATGGCGAAGGAGAAGAAAGAAAGGTTAATAATGGAAAGGAAGAGAACTCGAAGTGGTTTCTCTAGTGATTTTGAAGCACGAGGAAACCTAAAGCCGCCAAAAATGGAGATTCATGAAACGGGTTCTGTGCTTCGAGTCATTCTAACATGTGGGATTGATGACCATTTCGTTTTCTGTGAAATTATCAGAATATTGCATGAAGAGAATGTTGACGTAATCAATACCAGTTATTCAGTTGTTGGAGATTCGGTGATTCATGTTGTGCTCGGGGAGGTTGGGCAATCAATGTTCCAATCTGGAGCTAGCAAAGTGAGTGAGAAGCTGAAATGGTTCGTAAACAGATCTATCTGTGATGAAGAAATGGACCCTAATGTTATGGGATTCTGA 591 0.4112 MDQQQENQPSSTRVDRKIVEKNRRNHMKNLYSELNSLLPSYNPKQVVALPDQIDEATEYIKSLEAKVRMAKEKKERLIMERKRTRSGFSSDFEARGNLKPPKMEIHETGSVLRVILTCGIDDHFVFCEIIRILHEENVDVINTSYSVVGDSVIHVVLGEVGQSMFQSGASKVSEKLKWFVNRSICDEEMDPNVMGF* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1067 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 82 IPR036638 GO:0046983
Pvu5g1067 196 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 187 IPR015660 GO:0003700|GO:0006357
Pvu5g1067 196 MobiDBLite consensus disorder prediction 1 22 - -
Pvu5g1067 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Pvu5g1067 196 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
Pvu5g1067 196 SMART finulus 17 69 IPR011598 GO:0046983
Pvu5g1067 196 Gene3D - 2 90 IPR036638 GO:0046983
Pvu5g1067 196 Coils Coil 53 80 - -
Pvu5g1067 196 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1067 Pvu-Chr5 30785563 30786451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1067 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.766 5.68e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g1067 HLH 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1067 - - gmx:100784042 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1067 5 30785563 30786451 Pvu5g1067 5 30785563 30786451 ECH
Pvu5g1067 5 30785563 30786451 Pvu11g1230 11 19828256 19829407 PCT