Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1066 ATGGGTGATCAACAGCAAAGGGATCAACCTTCTTCAATGAAGGGGCTCGAAAGAAGGATTGTAGAAAAAAACAGGAGAAACCATATGAAGAACCTTTGTTCCAACCTTAACTCTCTTCTGCCTAACAATAATATTCCCAGGGAAGGAGAATTATCACGTGGTGATTTAATAGACGAGGCTACCAACTACATCAAGAACTTAGAGACAAAGGTGAAGATGGCACAGCAGAAGAAAGAAAGCTTACTACTGCAAAAGAAGAGATCTCGTAGTGCATCTTCCAGCAGTTATGAAGCACCAAAAATTGAGATTCATGAGATGGATTCCTCTCTACAAATCATTCTAATGTGTACACACGACAACCAGTTCATTCTGACAGAAATTATTCGCATACTGCTCGAAGAGACAATAGAGGTCATCAGTGTCAATTCTTCAATCACTGGAAACTCAATGCTACATGTTGTGAAAGCACAAGAAGGAACAACCACCATTAGTGAGAGACTGAAAAGGTTTGTGAACGAACATCGGGAGAACATTTAA 537 0.3985 MGDQQQRDQPSSMKGLERRIVEKNRRNHMKNLCSNLNSLLPNNNIPREGELSRGDLIDEATNYIKNLETKVKMAQQKKESLLLQKKRSRSASSSSYEAPKIEIHEMDSSLQIILMCTHDNQFILTEIIRILLEETIEVISVNSSITGNSMLHVVKAQEGTTTISERLKRFVNEHRENI* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1066 178 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 175 IPR015660 GO:0003700|GO:0006357
Pvu5g1066 178 Pfam Helix-loop-helix DNA-binding domain 18 68 IPR011598 GO:0046983
Pvu5g1066 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 86 IPR036638 GO:0046983
Pvu5g1066 178 Gene3D - 17 93 IPR036638 GO:0046983
Pvu5g1066 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 67 IPR011598 GO:0046983
Pvu5g1066 178 Coils Coil 57 84 - -
Pvu5g1066 178 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 175 - -
Pvu5g1066 178 SMART finulus 19 73 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1066 Pvu-Chr5 30748354 30749137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1066 14 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.831 8.94e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g1066 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1066 - - aprc:113855892 143.28