Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1060 ATGGTTGCCACTCAAAGACTGCAGTTTTCTTTGTGGAAGAGGAGGAGGGGGCTTGGATTTTTGTTTCAGATTGCAGTTGGGTGGTGGGTGGTTCTACTGTTAGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGACGAGCTGTTTACCAGAAAGGACGAGAGCAATTTAGGCCCATTTTCACAGTGGAACATAACAGGAACTTACAAAGGGAATTGGAAATTTTTGGATACCACAAATGGCTCTTCCAGATTTCCAAACATCAGAAAAACAAATGGCAATTCTGTAATTGAGTTAGTCACTACTCCTACAAAGATAAGTGGAGTACATTATGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTCAGTGGTGCCCAAATCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTCGCCAACAGTGGAAAAGAAGGGGAGTTGAATCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTACAAGATTCTTCGCGAGATAAAATGTGGAGAAGGAAACATTCTCTGATTCATGATGCGGAGAAACATTGTAATATTGAAATTGCTGCTCAGATTTCACGCTTGCCATCATCAAATAACGAGGGTGAACATGATCATTTTCATCTAGAAGGGTTAATGGAGAGCCCCTCTGCGGATGATGATGGGGACTGCTTCTCACCATTACTGTTAAATGCAACGTCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGGTGGTTACTTTTGTTTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAAGTTTCAATACTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTGCATCTCACTGCAGGAATACTAGTTGAATCATTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCAATCTGGAAGGCAAGTAGGCCTTTGAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTCTTCTTCTTCTTATGTACTCTTTTTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCGCGCAAACCATTGCATCCTCATTATATCTTAGGGATAACCGTCACTAGGCTAGCAATCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAGCCAGACAAGACCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGAAACAAGACATGCTACAGACTGTGTGATTTGCATGACAGCCATTGATATTTCCCAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGGCGGCCATTACCCCCTGCCTAG 1710 0.4129 MVATQRLQFSLWKRRRGLGFLFQIAVGWWVVLLLVNPVAGLRPLRERTRSWDDELFTRKDESNLGPFSQWNITGTYKGNWKFLDTTNGSSRFPNIRKTNGNSVIELVTTPTKISGVHYVQGVVIFHDVFDNEYDVSGAQIRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDAEKHCNIEIAAQISRLPSSNNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLVVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPLLLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKTWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQETRHATDCVICMTAIDISQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1060 569 SMART ring_2 519 562 IPR001841 -
Pvu5g1060 569 SMART ringv_2 518 563 IPR011016 GO:0008270
Pvu5g1060 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 569 IPR013083 -
Pvu5g1060 569 PANTHER RING ZINC FINGER PROTEIN 11 569 - -
Pvu5g1060 569 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 11 569 - -
Pvu5g1060 569 ProSiteProfiles Zinc finger RING-type profile. 519 563 IPR001841 -
Pvu5g1060 569 Pfam Ring finger domain 518 563 IPR001841 -
Pvu5g1060 569 SUPERFAMILY RING/U-box 503 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1060 Pvu-Chr5 30548610 30559379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1060 510 567 C3H Transcription Factor Family AT1G53010 30.508 2.39e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1060 K23788 - gmx:100780140 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1060 5 30548610 30559379 Pvu5g1060 5 30548610 30559379 ECH