Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1058 ATGGAGGGGTTGAAGAGGGGTGTGGTAGATTGTGGTGAAAACCAAAAAGGGTACGTGGAGCTTCCGCAGGAGAGGAAGAAGAAGAGAGGGGAGGAAGGGAAGAAAGGAGGTGCTGGTATTGGCATGCTGTGTTGTCAAGCGGAGAAGTGCAACGCGGATCTGCATGAGGCTAAGCAATACCACAGGAGGCACAAGGTGTGTGAGTGTCACGCCAAGGCTCAGGTTGTGCTTGTTCATGGCATCAAACAACGGTTCTGTCAGCAATGTAGCAGATTCCACGAGCTGTCTGAATTTGATGACGCAAAAAGAAGTTGTCGCAGGCGTTTGGCTGTACACAATGAACGGAGGAGAAAGAACTCTTCTGATCAATCTCAAGCAGAAGGGTCAAGCCACAAAGGGTCAGAGGCCCCTCAACTGAAGGACATTGCTTGTGTTCAGGCTAATGAAAGGGGAAGAACTCATATAACGATACAACAAAATTCACCTTACAAAAATTTCCAAATAAGATAA 510 0.4745 MEGLKRGVVDCGENQKGYVELPQERKKKRGEEGKKGGAGIGMLCCQAEKCNADLHEAKQYHRRHKVCECHAKAQVVLVHGIKQRFCQQCSRFHELSEFDDAKRSCRRRLAVHNERRRKNSSDQSQAEGSSHKGSEAPQLKDIACVQANERGRTHITIQQNSPYKNFQIR* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1058 169 MobiDBLite consensus disorder prediction 112 140 - -
Pvu5g1058 169 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 23 169 - -
Pvu5g1058 169 Pfam SBP domain 45 118 IPR004333 GO:0003677
Pvu5g1058 169 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 169 IPR044817 GO:0003677
Pvu5g1058 169 ProSiteProfiles Zinc finger SBP-type profile. 42 119 IPR004333 GO:0003677
Pvu5g1058 169 SUPERFAMILY SBT domain 43 122 IPR036893 GO:0003677|GO:0005634
Pvu5g1058 169 Gene3D - 37 106 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1058 Pvu-Chr5 30515251 30517073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1058 25 155 SBP-box Gene Family AT1G53160 52.632 9.79e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu5g1058 SBP 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1058 - - var:108333467 281.182