Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1054 ATGACCAGTGTCTGTGCCCAGCAGCACAAGTTTCACCCCTCTCACCAATTCCTCTCTCCAAAGAAAACCCTCAGAGAGATTGACATCCCTCCAAGGAAGCTCCTCACTCGCCGCGCCACCGCTGCATGCGGCATATCGGACTTGTTCTCAGACGACACCATGCTGCAAAAGTTCCTGCCTTCCAACAACCTTGATGACTCCGATGAGGACGACCCTTACTCCTCCGACCACTTCAGGATGTTTGAGTTCAAGGTCCGCCGGTGCACTCGAAGCCGGAGTCACGACTGGACTGACTGCCCTTTTGCCCACCCCGGCGAAAAGGCTCGCCGCCGCGACCCTCGGCGGTATCACTACTCGGGAACTGTATGTCCTGATTATCGCCGTGGAGGGTGCAATCGTGGTGATGCATGTGAATACGCTCATGGCGTATTTGAATGCTGGCTGCACCCTGCCAAATACAGGACAGAGGCCTGTAAGGATGGCAAGAACTGCAAGAGAAAGGTGTGTTTCTTTGCACACACACCTCGCCAGCTCAGAATTTTACCGGTAACTTCTCCTTCTTCAGATGACATGTCATGCACCAAGAGCATTAACAAGCTCTTCAACCATGCTTCAAGATCCAACAACAACTGCTGTTTGTTTTGCCACTGTGTTTCTTCTTCTTCTTCTTCTACCACCGCTTCTCCAACTTCAACCCTCTTCAACATTTCTCATTACTCGCCACCGCTATCACCATCGTCCTCCTCCTCACCACCTCCTTCTCCTTTGAAACCCCGAAACGGGGTTTCTGTTTCTCCAATTTCCCGATATGGTGCTGCGAATGTAAACCCTCATCATGGGGTGGTGAGTTACAAAGAAGCGTTCGCTGAATTTGTGAACTCCTTGGAGGGTTTGAGTTTGAACGAGGGCTCTCCTGTTTCTGGTGCCAAACCATTGAACTTGCCTTGGTTTGATGTTTCTCTGAACTGCGAGGAACAGCAACAACAACGACAACCGCTCAGTGCTTCTTCTTTTGGCTGCGAAGATCCGCAGCAATTTATTTATTCACCACCGTCCACTCGGACACCGACAAATGTTAAGTTGTGCAGCAACAGATTCATAGGCAACGACAACAAGGTTGTCGGTGGTGAGTCAAATGTCCCAGATCTCGCGTGGGTGAATGAGTTGCTGATGTAG 1176 0.5068 MTSVCAQQHKFHPSHQFLSPKKTLREIDIPPRKLLTRRATAACGISDLFSDDTMLQKFLPSNNLDDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPDYRRGGCNRGDACEYAHGVFECWLHPAKYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSPSSDDMSCTKSINKLFNHASRSNNNCCLFCHCVSSSSSSTTASPTSTLFNISHYSPPLSPSSSSSPPPSPLKPRNGVSVSPISRYGAANVNPHHGVVSYKEAFAEFVNSLEGLSLNEGSPVSGAKPLNLPWFDVSLNCEEQQQQRQPLSASSFGCEDPQQFIYSPPSTRTPTNVKLCSNRFIGNDNKVVGGESNVPDLAWVNELLM* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1054 391 SUPERFAMILY CCCH zinc finger 116 146 IPR036855 GO:0046872
Pvu5g1054 391 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 390 - -
Pvu5g1054 391 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Pvu5g1054 391 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Pvu5g1054 391 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Pvu5g1054 391 MobiDBLite consensus disorder prediction 244 263 - -
Pvu5g1054 391 Gene3D - 117 181 - -
Pvu5g1054 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Pvu5g1054 391 MobiDBLite consensus disorder prediction 245 259 - -
Pvu5g1054 391 PANTHER UNKEMPT FAMILY MEMBER 26 390 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1054 Pvu-Chr5 30459481 30460656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1054 73 181 C2H2 Transcription Factor Family AT5G12850 67.890 2.50e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu5g1054 zf-CCCH 4.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1054 K23047 - gmx:100787049 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1054 5 30459481 30460656 Pvu5g1054 5 30459481 30460656 ECH