Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1048 ATGGCGTTGTTATTCAAGGATCCGTCGAAGCTTTCGGCGTATCGAGATAGAAGATTCCCCGGAACGCAAGAGGATTTTGAGCATGCGCTTCTGACTTCAACCACCGTTTACGTTGGGAACATGTCGTTTTACACGACGGAGGAGCAAGTCTACGAGCTCTTTACTCGCGCTGGGGAAATCAAAAAGATAATTATGGGTTTGGACAAGAACACGAAAACGCCCTGTGGCTTCTGTTTCGTATTATATTATTCTCGTGAAGATACCGAGGATGCTTGCAAATACATAAGTGGGACGATACTGGATGATCGTCTCATTCGTGTTGATTTTGATTGGGGGTTCCAGGATGGAAGACAATGGGGTCGAGGGAGGAGTGGTGGCCAGGTCCGGGACGAGTATCGTACTGATTATGATCCTGGTAGAGGAGGTTATGGGAAGCTGGTCCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGCACTGGTTCTTTGGGTTCTTTTCCACCAGTTATTCCTAGTTCTTATGGTAGACACGGTGGAGGTCATGGTCACGGTCATGGTCATGGTGGTTCTCATCGGCATGGTAGAGATTACTATAGAAAGAGACACCGAGATGATGATCGCCACACACACGAGTCCTCAAAAAGAACTTCTGATCACGACTCTCGGAGGAACACTGACCATGAATCCAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGACGATGACGAGGAAGATGATAGAAAAAGACGGGCTTAA 774 0.469 MALLFKDPSKLSAYRDRRFPGTQEDFEHALLTSTTVYVGNMSFYTTEEQVYELFTRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRLIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPSSYGRHGGGHGHGHGHGGSHRHGRDYYRKRHRDDDRHTHESSKRTSDHDSRRNTDHESRPEKNPRFRESGDSDDDEEDDRKRRA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1048 257 CDD RRM_NCBP2 36 113 IPR034148 -
Pvu5g1048 257 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 218 - -
Pvu5g1048 257 MobiDBLite consensus disorder prediction 163 257 - -
Pvu5g1048 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Pvu5g1048 257 MobiDBLite consensus disorder prediction 124 138 - -
Pvu5g1048 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Pvu5g1048 257 SMART rrm1_1 35 108 IPR000504 GO:0003723
Pvu5g1048 257 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 218 IPR027157 GO:0000339|GO:0005846|GO:0045292
Pvu5g1048 257 MobiDBLite consensus disorder prediction 182 200 - -
Pvu5g1048 257 Gene3D - 5 150 IPR012677 -
Pvu5g1048 257 SUPERFAMILY RNA-binding domain, RBD 24 144 IPR035979 GO:0003676
Pvu5g1048 257 MobiDBLite consensus disorder prediction 120 140 - -
Pvu5g1048 257 MobiDBLite consensus disorder prediction 201 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1048 Pvu-Chr5 30366856 30370496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1048 35 109 Eukaryotic Initiation Factors Gene Family AT2G23350 28.000 3.24e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1048 K12883 - gmx:100789535 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1048 5 30366856 30370496 Pvu5g1048 5 30366856 30370496 ECH