Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1046 ATGCTGGCGGTGTCACCTTTGAGGAGTAGAAGTGATGAAGAGCAAGGGGAGATGGAAAGTTTCTCCATTGGAACTGATGACTTTGCTGACCTTTCAGAAGGGAACTTGCTTGAAAGCATCAACTTTGATGATCTATTCATGGGAATCAACGATGACGAAGATGTCTTGCCAGATCTGGAGATGGACCCTGAATTGCTTGCTGAGTTCTCCCTCAGTGAGGAATCGGAGATAGTCTCATCAGTTTCAGTGGCAAATAACAAATCTGATGACAGGAATGAGAATAATATAGTTATTACAGAGACACAAGATGAGGTTATAGCAGCCAATTTTTGTTCAGATTCTGGTTCCAATTCGGGGTCTAGTAGAGGGGAAGAGACAGGAAACAAAAGTGATGAATCAACTCATTCAGTGGGAGTGAATCCATCCCCTAAGGAAAGTGAGAAAGGAAGAAAATCATCAAGCCATTCAAGGAATAATCAACAAGGGAAGAGAAAGGTAAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGACTGTCTCACCCGTCATAACATTGCCAGCCACCTTCAAAAATATCGATCTCATAGGAAGCATTTGATAGCACGTGAAGCTGAAGCAGCAAGGTGGAGTCAAAGGAAACAATTCATGGGTGCAGCAAGTGTAGGTAGAGGAGGAGGTAAGAGAGACGTGAACCCTTGGCTTGCACCTACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTTAGACCTTTACATGTATGGGGGCATCACACCATGGACCAGTCCTTCATCCACATGTGGCCTAAACATCTCCCATATTCACCGTCCCGGCCGGCTTGGCCACCGCGAACAGCTCCATCTCCGCCGCCTCCGGACCCTCTTTATTGGCACCAACATCAGCGGGCTCCAAACGCACCAACCCCTGGAACACCGTGTTTTCCACAGCCTCTGACAACCACGAGATTTGGTTCTCAAACTGTTCCGGGCATCCCACCACACCATGCAATGTTCCAAATGGTAGATCCAGGCATTGGCCTCCCAGCCACCCAACCACCACCTCGACCCCTCCTCGACTTTCATCCGTCAAAGGAGAGCATAGATGCTGCTATTAGTGATGTTTTATCAAAACCATGGTTGCCACTACCCCTTGGCCTTAAAGCTCCAGCACTTGATGGTGTAATGGGTGAACTACAAAGACAAGGGATTCCCAAAATCCCTCCCTCTTGTGCTTGA 1308 0.4786 MLAVSPLRSRSDEEQGEMESFSIGTDDFADLSEGNLLESINFDDLFMGINDDEDVLPDLEMDPELLAEFSLSEESEIVSSVSVANNKSDDRNENNIVITETQDEVIAANFCSDSGSNSGSSRGEETGNKSDESTHSVGVNPSPKESEKGRKSSSHSRNNQQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLIAREAEAARWSQRKQFMGAASVGRGGGKRDVNPWLAPTMGFPPMTPMHHFRPLHVWGHHTMDQSFIHMWPKHLPYSPSRPAWPPRTAPSPPPPDPLYWHQHQRAPNAPTPGTPCFPQPLTTTRFGSQTVPGIPPHHAMFQMVDPGIGLPATQPPPRPLLDFHPSKESIDAAISDVLSKPWLPLPLGLKAPALDGVMGELQRQGIPKIPPSCA* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1046 435 MobiDBLite consensus disorder prediction 110 169 - -
Pvu5g1046 435 Pfam Myb-like DNA-binding domain 168 217 IPR001005 -
Pvu5g1046 435 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 165 219 IPR006447 GO:0003677
Pvu5g1046 435 MobiDBLite consensus disorder prediction 1 26 - -
Pvu5g1046 435 Gene3D - 162 223 - -
Pvu5g1046 435 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 435 - -
Pvu5g1046 435 MobiDBLite consensus disorder prediction 110 124 - -
Pvu5g1046 435 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 435 IPR044825 GO:0003700|GO:0045893
Pvu5g1046 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 221 IPR017930 -
Pvu5g1046 435 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1046 Pvu-Chr5 30345696 30349610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1046 1 330 G2-like Transcription Factor Family AT5G44190 41.243 2.18e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu5g1046 Myb_DNA-binding 5.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1046 - - gmx:100790591 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1046 5 30345696 30349610 Pvu5g1046 5 30345696 30349610 ECH
Pvu11g1282 11 26377070 26382146 Pvu5g1046 5 30345696 30349610 PCT