LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu5g1044	ATGGGTGTTGATTACTACCAAATCCTTCAGGTCGATAGGAATGCTAAAGAAGAGGACCTGAAGAGATCGTACAAGAGACTGGCCATGAAATGCCACCCGGACAAAAATCCGACAAAGAAGGAAGCCGCTGAATCGATGTTTAAACAAGTGTCTGAAGCCTACGAGGTGTTAAGTGATCCCCGCAAGAGGGCAATTTTTGATAAGTATGGTGAAAATGGTCTTAAAGGTCAGGTGCCACCTGCTGATGCTGGTGCTTCTCATCGTGGTGTTTTTCATGGTGGTGCTTCTCGTGCTGGTGGAGGAGGAACCGCGTTCTATTCCAGTGGGGACTTTCCGGCCTCGGCTTGGTTCAATCCTCGGAGTGCTGATGATGTTTTTGCAGAGTTCTTTGGATGTTCGGACTCTGGTGGGGGCATGAGATCATCGACATTCTCTTTTAGTGAGGAGGCGTTTAGGACTTCCGGGGGCGGCGGCGGAGGAGGAGAGACCCATGCGAGTCGTGGTGGTGGTCCCCTCAAAGCAGCTCCCATTGAGAAGAAGTTGCCCTGTACACTTGAGGAGTTATACAATGGGACCACCAAAAGGATGAAGATATCTCGGGAAATTTTTGAGGCCTCTGGAAGACATATGCAGGTAGAAGAGATATTGACAATCAATGTGAAGGCTGGTTGGAAGAAGGGCACCAAGATCACCTTTATAGAGAAGGGAAATCAACAGCCAAATGTGACACCAGCTGATATTGTTTTCATCATAGATGAAAAAGTTCATGGAGTTTATTCCAGAGATGGAAATGACCTTGTGGTCACCCAGAAGATATCTCTTGTGGAAGCCTTGACAGGCTACATTGTGAACCTGGTCACACTTGATGGAAGAAACTTAACTGTGCCTATCAGCCGAATCATTCATCCTCAATATGAGGAGGTTGTTGAAAGAGAAGGGTTGCCTCTCTCAAGGGATCCAACAAAGAAGGGAAACTTGAGGATAAAGTTCAACATCAGATTCCCATCCAAGCTCACTTTTGACCAGAAGGTTGGAATGAAGAAACTTTTGGGTGCTTGA	1059	0.4674	MGVDYYQILQVDRNAKEEDLKRSYKRLAMKCHPDKNPTKKEAAESMFKQVSEAYEVLSDPRKRAIFDKYGENGLKGQVPPADAGASHRGVFHGGASRAGGGGTAFYSSGDFPASAWFNPRSADDVFAEFFGCSDSGGGMRSSTFSFSEEAFRTSGGGGGGGETHASRGGGPLKAAPIEKKLPCTLEELYNGTTKRMKISREIFEASGRHMQVEEILTINVKAGWKKGTKITFIEKGNQQPNVTPADIVFIIDEKVHGVYSRDGNDLVVTQKISLVEALTGYIVNLVTLDGRNLTVPISRIIHPQYEEVVEREGLPLSRDPTKKGNLRIKFNIRFPSKLTFDQKVGMKKLLGA*	353

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu5g1044	352	Gene3D	-	176	255	-	-
	Pvu5g1044	352	PANTHER	DNAJ HOMOLOG SUBFAMILY C MEMBER	1	351	-	-
	Pvu5g1044	352	Gene3D	DnaJ domain	3	142	IPR036869	-
	Pvu5g1044	352	PRINTS	DnaJ domain signature	6	24	IPR001623	-
	Pvu5g1044	352	PRINTS	DnaJ domain signature	24	39	IPR001623	-
	Pvu5g1044	352	PRINTS	DnaJ domain signature	42	62	IPR001623	-
	Pvu5g1044	352	PRINTS	DnaJ domain signature	62	81	IPR001623	-
	Pvu5g1044	352	PANTHER	DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE	1	351	-	-
	Pvu5g1044	352	SUPERFAMILY	HSP40/DnaJ peptide-binding domain	259	343	IPR008971	GO:0006457\|GO:0051082
	Pvu5g1044	352	CDD	DnaJ	4	59	IPR001623	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu5g1044	Pvu-Chr5	30309869	30313494	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu5g1044	4	67	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	41.176	4.18e-08	52.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu5g1044	K09510		-	pvy:116113367	466.848

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