Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1037 ATGCTAGAAAAGATGGATGATGGAGAAATTTCAAATGCTTTTCCTCTTCAGAACCCATCAACTGCTGCATCTAACCAACCTCCTGCTTTGAAGAGGAAGAGAAACCTCCCTGGAAATCCAGATCCTGAAGCTGAGGTCATAGCCTTGTCTCCAAAGACTCTGATGGCAACAAACAGATTCGTGTGTGAAATTTGTCTCAAGGGTTTCCAAAGGGACCAAAATCTTCAACTCCATCGACGAGGGCACAACCTTCCTTGGAAGCTAAAGCAGAGAACAAGCAAAGAAGTAAGGAAGAGGGTTTATGTGTGTCCAGAGAAGACTTGTGTCCACCACCACCCTTCAAGGGCTCTGGGAGACTTAACTGGGATTAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACCCGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGTTTCATCACTCACAGGGCTTTCTGCGATGCCTTAGCAGAAGAAACAGCAAGGGTAAACGCAGCATCAAACATTAGCAACTACAGCATCATGCAAAATCCCCTCGGTCCTAACATGACAACCCATTTTTCATCATTTTTCAAGCCAAATTCGTGCCCCGAGGAGCCTCTCCTAGGTAATCAAACATCTAAGGGGCTATCCCTTTGGATGACTCAAACATCTCAGGCTCATCAAACAATTGCTAACAACAATTTGCATGAATTTCAACAACTTGGGTCTGCTACAAGCCCAACCTCAATTTATTGTGGTGGTGGTGGTGGAAATCCACTTGCTCCTTGCTCAAATCCACCACCCTCTAACTACCAACTAAATTGGGTGTTTGGAAATAAACTCTCCTCCAATGGAAGCCAGGAGCTAACTAGCAGTGCTTCACTTCCACTAGTCGACAATATTGTTAAGGATAACCCCAACCTGCAACTCATAAGTGTTCCTTCCTTGTATAGTTCACAACACCAATCCCATCAAACAACCTCAGCAAACATGTCAGCCACAGCTTTATTGCAAAAAGCTGCGCAAATTGGGACAACTTCATCGGACCCATCATTATTCCTCGGGAGCATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAGTTTTGTGGTATGTACGGTTCAAGTTCAGTACTCACAAGTCATGAGGGAGAGAATAATTATTCGGGTGATTTGTCACAAATGCCCCCAGCAAAACGACGGCACGTACAGAATGAAGAGAGTGCATGGGGACAAACTAGGGATTTTCTTGGAGTTGGTGGTGCCAACCATTTGCCACCCTTCATCAACCAACGGATGGATTTAATTTGA 1392 0.449 MLEKMDDGEISNAFPLQNPSTAASNQPPALKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNISNYSIMQNPLGPNMTTHFSSFFKPNSCPEEPLLGNQTSKGLSLWMTQTSQAHQTIANNNLHEFQQLGSATSPTSIYCGGGGGNPLAPCSNPPPSNYQLNWVFGNKLSSNGSQELTSSASLPLVDNIVKDNPNLQLISVPSLYSSQHQSHQTTSANMSATALLQKAAQIGTTSSDPSLFLGSIGLKCNSPGQDGNKFCGMYGSSSVLTSHEGENNYSGDLSQMPPAKRRHVQNEESAWGQTRDFLGVGGANHLPPFINQRMDLI* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1037 463 PANTHER F-BOX ASSOCIATED PROTEIN 5 462 - -
Pvu5g1037 463 Gene3D Classic Zinc Finger 129 196 - -
Pvu5g1037 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Pvu5g1037 463 SUPERFAMILY beta-beta-alpha zinc fingers 131 180 IPR036236 -
Pvu5g1037 463 MobiDBLite consensus disorder prediction 13 28 - -
Pvu5g1037 463 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Pvu5g1037 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 462 - -
Pvu5g1037 463 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1037 Pvu-Chr5 30078118 30081745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1037 27 447 IDZ Gene Family AT1G03840 53.319 1.33e-141 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1037 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1037 K25870 - gmx:100778666 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1037 5 30078118 30081745 Pvu5g1037 5 30078118 30081745 ECH