Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1009 ATGGGTTACTTCGACGACGATCACGAGCACAGTCCGTTTGGAACACTCCAGGACCACAGCTTCAACCGGAGGATACTAATCACCGCCATAGTTTCCCTATCGGTGGTGTTAGTTTTAGTCTTTGCACTTCACATCTACGCAAGGTTTTTTCTCAGGCGTCAAACTCGGCGCCGGAGCGCCCTGTACCAACTCAGCCTCCACGTGGCACACGCGCAAACCCAACCACCAAACACCGGACTCGACCCTGCCCTCATCACAGCTCTCCCCACCTTCCCCTTCAAACACCAAAACGACGCCGTTGAGTGCGCCGTGTGCTTGAGCGTTCTGGAAGACGGAGAACACGTCAGACTTCTTCCTAATTGCAAGCATAGCTTCCACGTGGGCTGCATCGACACGTGGCTCGCCTCGCATTCCACGTGTCCCCTCTGTCGAACCAAGGCCGAACCGCTCCCGCTAGAACCGGTCCAGCGCGAGGGCCCCACCGGGTTCGCTCTTCCCACCGCCCCGCTTTTCCTCGAAAACGTGGAAGGCACTTCCGACGGCGCTAATGGGTCACCTAAAGTCAACGGCTCCAATTCCAGGTTGAGTTCGTTTCGAAGGATTCTTAGTAGAGAGAGATCGTTGAAGAGAATCCAACCTTCTACGCATGATGATGTTGAACAAGACTTAGAGAGACAGTGA 681 0.5507 MGYFDDDHEHSPFGTLQDHSFNRRILITAIVSLSVVLVLVFALHIYARFFLRRQTRRRSALYQLSLHVAHAQTQPPNTGLDPALITALPTFPFKHQNDAVECAVCLSVLEDGEHVRLLPNCKHSFHVGCIDTWLASHSTCPLCRTKAEPLPLEPVQREGPTGFALPTAPLFLENVEGTSDGANGSPKVNGSNSRLSSFRRILSRERSLKRIQPSTHDDVEQDLERQ* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1009 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 149 IPR013083 -
Pvu5g1009 226 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 1 226 - -
Pvu5g1009 226 MobiDBLite consensus disorder prediction 199 226 - -
Pvu5g1009 226 SUPERFAMILY RING/U-box 95 148 - -
Pvu5g1009 226 MobiDBLite consensus disorder prediction 178 198 - -
Pvu5g1009 226 Pfam Ring finger domain 101 144 IPR001841 -
Pvu5g1009 226 PANTHER RING FINGER DOMAIN-CONTAINING 1 226 - -
Pvu5g1009 226 MobiDBLite consensus disorder prediction 176 226 - -
Pvu5g1009 226 CDD RING-H2_PA-TM-RING 101 144 - -
Pvu5g1009 226 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Pvu5g1009 226 SMART ring_2 102 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1009 Pvu-Chr5 28979269 28980467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1009 4 226 C3H Transcription Factor Family AT2G42360 46.809 1.67e-56 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1009 K19038 - gmx:100780265 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1009 5 28979269 28980467 Pvu5g1009 5 28979269 28980467 ECH