Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1002 ATGTTTGTTGCTATCTTTCAGGGTGATAGAATTCATGTTTCCGTTAGAAGAACTCTAATTTATAAATTTCAAAATGATATTTTTGAGGATAAAGTTTATTCCTTCAATTTCTTTAGTGTGTCTACTAATACAGGATCTTATGGCACTACCTGTCACCAATACAAAATAAATTTTCAGTTTGGAACCAAAGTAACCTGTGTTGGTAATGATCTGGTCTCATGTCCAAAACCTCATTACACACCAATTTTTGTGTTAAAGGCGTCTGGTTTTGATACGGACTACTTAGTCGATGTTATTGGAATATTAACTGGTGTGGGAACTGAAAGAGAGCTGAATAGATCAAGTTCAACAACTAAGTTAAATGCGATTTCTATTGAAGCTGATGGCTACCGCATTGAGTGTACTTTATTTGGTAACTATGTTGATGAGCTCAATACATTTATATCATCTGGAGATGTGGAAAATATTGTCATCAGAGTGCACTTTGCTAAAGTTTTTCTACAAAATTGCTTGGACTGTACGAAAATAATATATAATGATAAGTCCAAAGATGCAACCGAACTCAAGAAAATGATGATTGAAAGTACAGATTCTCCTACACAGGGACTCAGTCAATTGTGTGATTCTGGAAAACAGAATGTTGAGGATGAATTCATCAGCTTCATTCATAGAAATACTATTCAAGGCCTGAAAGATTGCAAAAAGGAAAGCACTTTTGTTATCTTAGCTACAATAAAACATATTGTAGCTGATGACGATTGGTGGTACACAACTTGCTTATGCGGTAAAGCTGTTTACCCTGATTCTAAAATGTTTTTTTGTGAGAAATGTAACAAACATGTTATCAAAGTCCAACAGAGGTATAAGCTGAAGCTGCGAGTGATTGATGAAACGAATTCCACGACTTTCGTTCTATTTGACAGGGATGCCACTACACTGATCAATAAATCTTGCGCCGAATTATTTGAAAGTCATGATAAGAACGTTGATTCTGGTGTACTACCAAAAGACTTTGATCTTTTGATTGACAAAGTTGTGTTGTTTAAAGTTGGTTGTGTTAAATATCAATATCTTAGGTTTGACCAATCATTCCGTGTCAAAAAAGTTTGTATTGATGATAGTACTATACAAAGGTTTTGTGAAGGTCGTGTTGAAAATGTGGATTTATTTAATAAATTTTCCACTGAAGCTGCTGATTTGCAATCTAAAACTATTGATTTAGGCAGTGATAGTGTCTTAGGTACTGCTACTGAATTGGTTGCTCCACGGGTTACAACAGATTTTGCTTCACCTGCTCACACACCTGATGATGATATCCCACTGAGGATATTAAGAAAAAATATCAAGATCGAAAAGGGAGTAATAATACCTTAG 1374 0.3472 MFVAIFQGDRIHVSVRRTLIYKFQNDIFEDKVYSFNFFSVSTNTGSYGTTCHQYKINFQFGTKVTCVGNDLVSCPKPHYTPIFVLKASGFDTDYLVDVIGILTGVGTERELNRSSSTTKLNAISIEADGYRIECTLFGNYVDELNTFISSGDVENIVIRVHFAKVFLQNCLDCTKIIYNDKSKDATELKKMMIESTDSPTQGLSQLCDSGKQNVEDEFISFIHRNTIQGLKDCKKESTFVILATIKHIVADDDWWYTTCLCGKAVYPDSKMFFCEKCNKHVIKVQQRYKLKLRVIDETNSTTFVLFDRDATTLINKSCAELFESHDKNVDSGVLPKDFDLLIDKVVLFKVGCVKYQYLRFDQSFRVKKVCIDDSTIQRFCEGRVENVDLFNKFSTEAADLQSKTIDLGSDSVLGTATELVAPRVTTDFASPAHTPDDDIPLRILRKNIKIEKGVIIP* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1002 457 Gene3D - 6 66 IPR012340 -
Pvu5g1002 457 Gene3D - 202 384 IPR012340 -
Pvu5g1002 457 SUPERFAMILY Nucleic acid-binding proteins 223 357 IPR012340 -
Pvu5g1002 457 Pfam Domain of unknown function DUF223 7 65 IPR003871 -
Pvu5g1002 457 SUPERFAMILY Nucleic acid-binding proteins 90 191 IPR012340 -
Pvu5g1002 457 CDD RPA1_DBD_C 234 356 IPR013955 -
Pvu5g1002 457 CDD RPA1_DBD_B_like 97 193 - -
Pvu5g1002 457 Pfam Replication factor-A C terminal domain 240 328 IPR013955 -
Pvu5g1002 457 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 18 322 - -
Pvu5g1002 457 PANTHER REPLICATION FACTOR A 1, RFA1 18 322 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pvu5g1002 457 SUPERFAMILY Nucleic acid-binding proteins 8 69 IPR012340 -
Pvu5g1002 457 Gene3D - 76 200 IPR012340 -
Pvu5g1002 457 CDD RPA1_DBD_A_like 7 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1002 Pvu-Chr5 28738565 28741287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1002 7 314 Core DNA Replication Machinery Family AT5G08020 22.866 1.12e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1002 - - pvu:PHAVU_007G143500g 724.931