Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0979 ATGGATGAGAGAAATTGTATATCTGAGGAAGACAAGAGTGAAAGTAGCAAAACCTCTTCTGCAATTCTTAGAAGAAAACGTTCATTCTTGGATTTGAATGAAGAAGCAGCGGATGATGGAGATGGTAGCACCAGTGATGACCCCATCAGTATCAATGACATATCATCTCAAGAGGGTAATTTGAGCAGTAATAATAACTCAAGTGAAGAAGGGAAAGAGCGTGCAACTGCTGTTAGACAATATGTCCGGTCCAAAATGCCAAGACTCCGTTGGACTCCTGATCTTCATTTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACGCCCAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTAAAGAGCCATTTGCAGATGTATCGAAGTAAAAAGCTTGATGAGTCTGGCCAAGTTTTATCTCAGAATAAGGCAATGCAAGGAAGGCATAGTATTTTCGATATGTACGGAAGACTTAATGCCCCACGACACTTTGTGGTAGATAACAGAAATTATATTCCATCATCTCTGCTCATTCAACAATCACCTTATCAGATCAGTGCTCATGGCTCCTCAAGATCACACCCCACAGGTTTTTTCAATGGTCACATGATGATAAGATCAAGTTCAATGTGGGACAAAGATTTGTGTAGTTATCAGTATCAACGTAGTTCTTGCAGTCCTAACTTCGCTGGCCACGCTAAGTTTGATGCCGAGGTTCGTGATGTGAAAAATCGAATGCCAGAATTCCTAAATCAGGTTCAAGTATGGAAACAGGGTCATGTAAAAGATGAATTAGAGAGGTTGAATGAGAAAAAAGGGTCTCCAAGTTTTTTGGAGCTGAATTTAAGTCCAGATTCAAGAAACATTAATAGTGATGAGCAGATGAAGAAAGATCCAGCAGAAAGTGAACAAGAAATTAACACCAGACTCTCTCTTTCACTGTTCACTTCTTCGTCCTCAAATTCATCACAACAAGCACAATGTAGTGAAAATCATAAAGACGATACCCATGTTGAGAGTTTTTGTTTACAAAATTATGCACCAAGGACTCGTTTGGGCTGA 1095 0.4018 MDERNCISEEDKSESSKTSSAILRRKRSFLDLNEEAADDGDGSTSDDPISINDISSQEGNLSSNNNSSEEGKERATAVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQNKAMQGRHSIFDMYGRLNAPRHFVVDNRNYIPSSLLIQQSPYQISAHGSSRSHPTGFFNGHMMIRSSSMWDKDLCSYQYQRSSCSPNFAGHAKFDAEVRDVKNRMPEFLNQVQVWKQGHVKDELERLNEKKGSPSFLELNLSPDSRNINSDEQMKKDPAESEQEINTRLSLSLFTSSSSNSSQQAQCSENHKDDTHVESFCLQNYAPRTRLG* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0979 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Pvu5g0979 364 Gene3D - 86 143 - -
Pvu5g0979 364 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 19 347 - -
Pvu5g0979 364 SUPERFAMILY Homeodomain-like 85 141 IPR009057 -
Pvu5g0979 364 MobiDBLite consensus disorder prediction 1 21 - -
Pvu5g0979 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 19 347 IPR044848 GO:0003700
Pvu5g0979 364 MobiDBLite consensus disorder prediction 286 314 - -
Pvu5g0979 364 MobiDBLite consensus disorder prediction 45 71 - -
Pvu5g0979 364 MobiDBLite consensus disorder prediction 33 77 - -
Pvu5g0979 364 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 142 IPR006447 GO:0003677
Pvu5g0979 364 Pfam Myb-like DNA-binding domain 89 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0979 Pvu-Chr5 28253135 28257572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0979 78 212 G2-like Transcription Factor Family AT2G42660 52.143 1.10e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu5g0979 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0979 - - vun:114183967 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0979 5 28253135 28257572 Pvu5g0979 5 28253135 28257572 ECH