Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0942 ATGGTTTCCCCGGAAAACAGCAATTGGCTCTTCGACTACCCGTTGATTGACGATGACATTACCGTCGGAGACGGTTCCTTCACCGTCTCCGCTTTCTCCTGGCCCCCACCTCCCTCCAATGTCAGTGTTGAAATTGATGCTTCACTCGTTGATTCTGATGGCCTCAAAGATCCTGCCTTGAAAAAGAGGGGTAGATCTGATTTATGTACTGCTTCTAGCTCTAAGGCGTGTCGGGAGAAGTTGCGAAGGGATAGGCTTAATGACAAATTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTCTGATTGATGCTGTCCGTATGGTGACACAGCTGCGGGATGAAGCCCAGAAGTTGAAAGAGTCAAATACGGGTCTTCAAGAGAAGATTAAAGAGTTAAAGACTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGTAGAGAAAGAGAAGTTGGAGCTGCAGGTAAAATCAATGAATGCCCAACCTGCTTTCTTGCCACCCCCTTCTGCAATCCCGGCCGCGTTTGCTCCACAAGGTCAAGCCCCGGGCAACAAGTTGGTGCCTTTCATCAGTTATCCGGGTGTTGCCATGTGGCAATTTATGCCTCCGGCCGCAGTGGATACATCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 696 0.4943 MVSPENSNWLFDYPLIDDDITVGDGSFTVSAFSWPPPPSNVSVEIDASLVDSDGLKDPALKKRGRSDLCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRDEAQKLKESNTGLQEKIKELKTEKNELRDEKQRLKVEKEKLELQVKSMNAQPAFLPPPSAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0942 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 147 IPR036638 GO:0046983
Pvu5g0942 231 CDD bZIP 136 168 - -
Pvu5g0942 231 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 231 - -
Pvu5g0942 231 CDD bHLH_AtILR3_like 75 150 - -
Pvu5g0942 231 SMART finulus 76 127 IPR011598 GO:0046983
Pvu5g0942 231 Coils Coil 111 173 - -
Pvu5g0942 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983
Pvu5g0942 231 Gene3D - 73 153 IPR036638 GO:0046983
Pvu5g0942 231 PANTHER BHLH TRANSCRIPTION FACTOR 1 231 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Pvu5g0942 231 Pfam Helix-loop-helix DNA-binding domain 74 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0942 Pvu-Chr5 26093746 26096198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0942 1 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.417 1.24e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g0942 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0942 - - ccaj:109815088 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0942 5 26093746 26096198 Pvu5g0942 5 26093746 26096198 ECH
Pvu5g0942 5 26093746 26096198 Pvu11g1466 11 33734065 33737984 PCT