Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu5g0942 | ATGGTTTCCCCGGAAAACAGCAATTGGCTCTTCGACTACCCGTTGATTGACGATGACATTACCGTCGGAGACGGTTCCTTCACCGTCTCCGCTTTCTCCTGGCCCCCACCTCCCTCCAATGTCAGTGTTGAAATTGATGCTTCACTCGTTGATTCTGATGGCCTCAAAGATCCTGCCTTGAAAAAGAGGGGTAGATCTGATTTATGTACTGCTTCTAGCTCTAAGGCGTGTCGGGAGAAGTTGCGAAGGGATAGGCTTAATGACAAATTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTCTGATTGATGCTGTCCGTATGGTGACACAGCTGCGGGATGAAGCCCAGAAGTTGAAAGAGTCAAATACGGGTCTTCAAGAGAAGATTAAAGAGTTAAAGACTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGTAGAGAAAGAGAAGTTGGAGCTGCAGGTAAAATCAATGAATGCCCAACCTGCTTTCTTGCCACCCCCTTCTGCAATCCCGGCCGCGTTTGCTCCACAAGGTCAAGCCCCGGGCAACAAGTTGGTGCCTTTCATCAGTTATCCGGGTGTTGCCATGTGGCAATTTATGCCTCCGGCCGCAGTGGATACATCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA | 696 | 0.4943 | MVSPENSNWLFDYPLIDDDITVGDGSFTVSAFSWPPPPSNVSVEIDASLVDSDGLKDPALKKRGRSDLCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRDEAQKLKESNTGLQEKIKELKTEKNELRDEKQRLKVEKEKLELQVKSMNAQPAFLPPPSAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* | 232 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu5g0942 | 231 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 75 | 147 | IPR036638 | GO:0046983 | |
Pvu5g0942 | 231 | CDD | bZIP | 136 | 168 | - | - | |
Pvu5g0942 | 231 | PANTHER | BHLH DOMAIN CLASS TRANSCRIPTION FACTOR | 1 | 231 | - | - | |
Pvu5g0942 | 231 | CDD | bHLH_AtILR3_like | 75 | 150 | - | - | |
Pvu5g0942 | 231 | SMART | finulus | 76 | 127 | IPR011598 | GO:0046983 | |
Pvu5g0942 | 231 | Coils | Coil | 111 | 173 | - | - | |
Pvu5g0942 | 231 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 70 | 121 | IPR011598 | GO:0046983 | |
Pvu5g0942 | 231 | Gene3D | - | 73 | 153 | IPR036638 | GO:0046983 | |
Pvu5g0942 | 231 | PANTHER | BHLH TRANSCRIPTION FACTOR | 1 | 231 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Pvu5g0942 | 231 | Pfam | Helix-loop-helix DNA-binding domain | 74 | 121 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu5g0942 | Pvu-Chr5 | 26093746 | 26096198 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu5g0942 | 1 | 231 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G54680 | 70.417 | 1.24e-112 | 320 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pvu5g0942 | HLH | 4.5e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu5g0942 | - | - | ccaj:109815088 | 384.415 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu5g0942 | 5 | 26093746 | 26096198 | Pvu5g0942 | 5 | 26093746 | 26096198 | ECH | |
Pvu5g0942 | 5 | 26093746 | 26096198 | Pvu11g1466 | 11 | 33734065 | 33737984 | PCT |