LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu5g0937	ATGAAGCACTTTGGAATGGCTATTCAACAATTTATGGGTATCACAACAAAGGTTATCTTTTGCAGCATTTTGGTTTTTCATATTTTGGCCGTAGTCAGCAGTGAAGAGAAGAAAACTCAAGAAGAATTCATTAGCCAACTATTTGATCCTACATCTGCACTATTAACTGAGGATACGGCAGAGGTACTATGGATCATATGTTGGGAAGATTTGATTCGATTAAAGAAAGAAGTCGACGAATTTGGCTTTTGCCTCCCAAGGGAATTATGCAGAAACACCAATGAAGTTAGTTTAGAAATTGGCTCAGTAGCTAGAGAAAACATCCAAAAAATAATTAATGCATGTTGTCCTCAATTGAAGGAAAATGTTCTTAACTGTTTTAGAAAAAACAATTTTCCATTCCATCCTCTCAAGGAAGAGGCTGTCTCCAAGATTTGGCATGCAACATACATGGGATCACCTTCATCTAGAAGATATTTGGGTCAAATTTTGCCCCAGCACCTATCTGAAATACCAAACAAGGAACATAAATTACATACAAATATTAAAGATCAAGACTCTGCATCTAAATCTTCCCACTCTAAGGATAAAGATAAAGCATCTGGGACTAGTATGGCAATACCTATAGTGGTGGCATTTGTAGCTGCAGCATTGCTCATTTTATGTTGTTATCGATTTTGTGGGAGTGGACAAGTTAGCCAAAATGATGAGAGACCCCTTCTCAGCATGAGCATGAATGAATACTCAGTTGGTTCTTCTTCGAATAATAATATTGCATTCCAAAATTCCATGAAAGAAGGACCAATTGGGATTCACTCATCAAGTATTCAATTGGTTGATGAGAAGAGGAAGTCAGTCTCGGTGCATGAAGCTCAATTAGGAGAAATTGCTAGTGCTTCTTTTGTAAGACCATCATTTGAACTAAAACCTCCTCCTGGGAGAGCAGTAGTAAATGGATTGCTTCCTTTGAAACCTCCTCCTGGAAGGCCTGATCTTCTTCCTCCTCCTGAACCAATTAAACCTCCTGATGATCCCATTGTTCCTTCACCACCTTCTCCACCTGCTCCGCCTGCTCCGCCTGCTCCACCTGCTCCAACTTCTCCTTCTCCTCCTCCTCCCCCTCCTCCTCCTCGTCTTCAAACACCACCAAAGCCCACCAATGCTGGCCCTCCACCTCCTAGGAATGGCCCTAGACCACCACCCCCTCCTCCTGGCAAAGGCCCCAGAGCTCCACCACCACCACCACCTAGATCCAAGGGTGGTCCTGGTGCTGGTCCTAGACCTCCTCCACCCCCCAGAAGTGGTGCAGGTCCACCAAGAGCTCCTTCCGGTAAGGTTGTTGAGGAAGAACCCGACTATGAAGGTGAAGGGTATGTTCCTAAAGCTAAGTTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCTAACTCAGATCAAACAATGGTATGGAATCAACTCAAAGCAGGATCGTTCCAGTTTAATGAAGAAATGATGGAGACACTCTTTGGCTATAATGCCATGGCAGCGGATAAAGGAAAAGGCCAAGCAAAAAAAGAGGTTGCCTCCCAACCAGCTACTCCCCAACTTATACAAATCATTAACTCAAAGAAAGCACAAAATTTATCTATTCTATTAAAAGCATTGAATGTGACCTCAGATGAAGTTTGTGATGCACTTCTTGAAGGAAATGAGCTCCCCACAGAATTCCTTCAGACCTTGTTGAAGATGGCACCAACGTCAGAGGAAGAACTTAAGCTTAGAGTTTTCACTGGTAATACAGCCCTACTCACCCCTGCAGATAGGTTCCTTAAAGCCGTAGTTGACATTCCCTGTGCTTATAAACGAATGGAAGCACTAATTTACATGGGTACTCTTCAAGAGGATCTCACTAGTACTCGAGATTCCTTTGCAATTTTAGAGGTTGCTTGTAAAAAGCTAAGAAGCAGTCGATTATTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAATCGTATGAATGATGGGACATTCCGTGGTGGTGCACAAGCATTCAAACTCGATACACTGTTGAAATTATCTGATGTAAAAGGAGTAGATGGCAAGACCACGCTCTTGCACTTCGTTGTTCAAGAGATAATGCGCACTGAGGGCATAAGAGCTGCACGCATGGCAAAAGAGAATCACAGTTTCTCCAGCATAAAAACAGAAGACCTTCTTGAGGACTTCTCATATGAATCAGATGACCACTATCGTGAACTTGGTCTTCAGGTGGTTTCACGATTAAGCACTGAACTTGAGAATGTGAAGAAAGCAGCAGCTTTAGATGCTGATGGCTTAGTAGGAACAACTTCAAGACTAGGGCATGGTCTCATAAAGACAAGAGACTTCGTAATCAATGACATGAGAAACGTGAAGGGTGATAAAGGGTTTTATGAGACAGTGAAGAGTTTCGTGGAGAAAGCTGAGGCTGATGTCAAAAGTTTGCTAGAAGAGGAGAAGAAAATCATGGGTCTAGTGAAGAGCACTGGTGATTACTTTCATGGGGATTCAGGGAAGGATGAAGGGCTGAGATTGTTTATAATAGTACGTGATTTCTTAGTAATGTTGGATAAGGTGTGCAAGGAGATACAACTTGCACCACCAAAGAAGCCAGCAGCAAAAAGTGCAAAGCAAGAAACACCTAATCATTCTAGAAAACCTTCTTCCTCTGATACTCTTCCTCCTTCTCATGATTTAATGCGTCAACGAATTTCTCCACAAATCGCAAATAGGGGGATGGATGACTTTAGTTCAGATGATGAGAGTCCTTAG	2790	0.4247	MKHFGMAIQQFMGITTKVIFCSILVFHILAVVSSEEKKTQEEFISQLFDPTSALLTEDTAEVLWIICWEDLIRLKKEVDEFGFCLPRELCRNTNEVSLEIGSVARENIQKIINACCPQLKENVLNCFRKNNFPFHPLKEEAVSKIWHATYMGSPSSRRYLGQILPQHLSEIPNKEHKLHTNIKDQDSASKSSHSKDKDKASGTSMAIPIVVAFVAAALLILCCYRFCGSGQVSQNDERPLLSMSMNEYSVGSSSNNNIAFQNSMKEGPIGIHSSSIQLVDEKRKSVSVHEAQLGEIASASFVRPSFELKPPPGRAVVNGLLPLKPPPGRPDLLPPPEPIKPPDDPIVPSPPSPPAPPAPPAPPAPTSPSPPPPPPPPRLQTPPKPTNAGPPPPRNGPRPPPPPPGKGPRAPPPPPPRSKGGPGAGPRPPPPPRSGAGPPRAPSGKVVEEEPDYEGEGYVPKAKLKPFFWDKVQANSDQTMVWNQLKAGSFQFNEEMMETLFGYNAMAADKGKGQAKKEVASQPATPQLIQIINSKKAQNLSILLKALNVTSDEVCDALLEGNELPTEFLQTLLKMAPTSEEELKLRVFTGNTALLTPADRFLKAVVDIPCAYKRMEALIYMGTLQEDLTSTRDSFAILEVACKKLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIMRTEGIRAARMAKENHSFSSIKTEDLLEDFSYESDDHYRELGLQVVSRLSTELENVKKAAALDADGLVGTTSRLGHGLIKTRDFVINDMRNVKGDKGFYETVKSFVEKAEADVKSLLEEEKKIMGLVKSTGDYFHGDSGKDEGLRLFIIVRDFLVMLDKVCKEIQLAPPKKPAAKSAKQETPNHSRKPSSSDTLPPSHDLMRQRISPQIANRGMDDFSSDDESP*	930

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu5g0937	929	Pfam	Formin Homology 2 Domain	458	862	IPR015425	-
	Pvu5g0937	929	Gene3D	Formin, FH2 domain	459	896	IPR042201	-
	Pvu5g0937	929	PRINTS	Proline rich extensin signature	324	336	-	-
	Pvu5g0937	929	PRINTS	Proline rich extensin signature	345	361	-	-
	Pvu5g0937	929	PRINTS	Proline rich extensin signature	365	377	-	-
	Pvu5g0937	929	PRINTS	Proline rich extensin signature	381	402	-	-
	Pvu5g0937	929	MobiDBLite	consensus disorder prediction	323	438	-	-
	Pvu5g0937	929	MobiDBLite	consensus disorder prediction	888	902	-	-
	Pvu5g0937	929	PANTHER	FORMIN-RELATED	6	172	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Pvu5g0937	929	PANTHER	FORMIN-RELATED	193	927	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Pvu5g0937	929	SMART	it6_source	454	877	IPR015425	-
	Pvu5g0937	929	MobiDBLite	consensus disorder prediction	874	929	-	-
	Pvu5g0937	929	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	411	870	-	-
	Pvu5g0937	929	ProSitePatterns	Serine proteases, subtilase family, serine active site.	202	212	IPR023828	-
	Pvu5g0937	929	MobiDBLite	consensus disorder prediction	318	454	-	-
	Pvu5g0937	929	PANTHER	FORMIN-LIKE PROTEIN	193	927	-	-
	Pvu5g0937	929	PANTHER	FORMIN-LIKE PROTEIN	6	172	-	-
	Pvu5g0937	929	MobiDBLite	consensus disorder prediction	181	200	-	-
	Pvu5g0937	929	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	454	888	IPR015425	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu5g0937	Pvu-Chr5	26025336	26031230	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu5g0937	425	920	FH2 protein (formin) Gene Family	AT5G54650	60.516	0.0	573

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu5g0937	-		-	vun:114183601	772.311

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu5g0937	5	26025336	26031230	Pvu5g0937	5	26025336	26031230	ECH
	Pvu5g0937	5	26025336	26031230	Pvu11g1472	11	33995128	34003073	PCT