Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0920 ATGGCAGATGATCAATTTCAGGCAAGTGGGAACTGGTGGGACACAGCAAGGAACGTCAGATATGAAAGCCGGACGTCACACTCATCTTCCTCTGCCATCACCAACATAGGCAACTTTGGTTGGCAAGCTTCAGATATGGCAGAAATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTTCATGACTCACAGAATAAGCTTCAACCCCCAGATTCTACAACTTCCACTGACCCCAACTTGCATATCATGGATCTAGGCCTGTCATCCCAAGCCATGGATTGGAATCAAGCATCTTTGTTACGAGGAGAGAAGGGTACTGAGAATAGTTTCAGATCGATGTTGCAAGAGAATTTGAGCTCATCAAGAACCAATTTTCAGCAAGAAACTGGGGTGGAGTTGTCTCAACAAGTTCAATGGAGGTCAGAGAAGATGTTCTCTGCAGATTCTTCAAGCAATGAGTTCAAGCAAGTGAATAGGGGCTTCTCCTTGGATCAAAGCAAGTTTAGTCCACAATATAGCTCTGGGGACAGCACAGTGACAAGCCAAGGGTTACCCTCTTCTAACTTTCAGATGGATTCCTCAGCCTTGTATGGGACCCCTTCAATATTGCAAGGACTATTGGGACCTGATCACAATAACCAACCCCAACAACAACAACCTTCTTCCTTTGAGAACCGCTCCATAAGTTTTCCATACCCAACAACCTATGGATTAAACTCTAACAATGACCTGGTCCCTTCTTGGTCCAAAGTTCCTCAATTCTTGAGAGGTTCACCTCCAAAACAACCACCCAGTAACCAGTTGCATTTCACTAACAACGCACCCTTTTGGAACGCTTCTGAGGCTGCAAACTTCAAAGATATTCGGGCCAGCTTCTTCCCTTCATTGCAACCCCCGTTCTCTACGCCAAATTTTGAAGTACAGTCCAAGAATATATCTGAAGTTAGGGAGCGTGGTACTGTGGGAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTATGCCAGCTTTTAAGATGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCCTTAAGTACCCCGTATATGAAAACTGGAGCTCCAATACAGATTCAACAGAATTCTGGTAAATGTAAGGAAACTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGCTTGGTGCCTGTTTCGAGCACATTTCCAGTGACTCATGAAACCACAGTGGATTTTTGGACGCCAACATTCGGAGGGGCTTCCAGATAA 1377 0.4553 MADDQFQASGNWWDTARNVRYESRTSHSSSSAITNIGNFGWQASDMAEMKPRSSMDSSSVVFHDSQNKLQPPDSTTSTDPNLHIMDLGLSSQAMDWNQASLLRGEKGTENSFRSMLQENLSSSRTNFQQETGVELSQQVQWRSEKMFSADSSSNEFKQVNRGFSLDQSKFSPQYSSGDSTVTSQGLPSSNFQMDSSALYGTPSILQGLLGPDHNNQPQQQQPSSFENRSISFPYPTTYGLNSNNDLVPSWSKVPQFLRGSPPKQPPSNQLHFTNNAPFWNASEAANFKDIRASFFPSLQPPFSTPNFEVQSKNISEVRERGTVGKKSGNEPAPKRTRNETPSPMPAFKMRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKTGAPIQIQQNSGKCKETEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGASR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0920 458 MobiDBLite consensus disorder prediction 51 80 - -
Pvu5g0920 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 405 IPR036638 GO:0046983
Pvu5g0920 458 MobiDBLite consensus disorder prediction 48 80 - -
Pvu5g0920 458 CDD bHLH_AtbHLH_like 344 395 IPR045239 -
Pvu5g0920 458 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 447 - -
Pvu5g0920 458 MobiDBLite consensus disorder prediction 319 345 - -
Pvu5g0920 458 SMART finulus 348 393 IPR011598 GO:0046983
Pvu5g0920 458 MobiDBLite consensus disorder prediction 168 230 - -
Pvu5g0920 458 Gene3D - 348 408 IPR036638 GO:0046983
Pvu5g0920 458 MobiDBLite consensus disorder prediction 319 333 - -
Pvu5g0920 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 447 - -
Pvu5g0920 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0920 Pvu-Chr5 24456394 24460346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0920 103 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.835 4.19e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0920 - - gmx:100778697 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0920 5 24456394 24460346 Pvu5g0920 5 24456394 24460346 ECH