Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0904 ATGACCAACTCCTCTACTGAGAAGAATGGACTGAAGAAGGGTCCATGGACCCCAGAGGAAGATCAGAAACTCATCGATTACATTCACAAACATGGACACGGCAAATGGCGAACCATTCCCAAAAATGCAGGATTAAAAAGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCTAACTACTTGAGACCTGATATAAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATCATCCAGTTACACAGTGTTCTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACCCACATCAAGAAAAAGCTATTCAAGATGGGGATTGATCCTGTTACTCACACACCACGCCTTGATGTTCTACAACTTGCCTCCATTCTCAACACATCTTTATTCAATTCATCACCCCAATTTAACCACCCTTTTCTTTCTGGGATCGGAAGATCAGTGATAAACCCAACCCACCTCCTAAGTTTGCTCTCCACTCTTCTGTCATGTCAAAGCAGAAACAACCCTGATAATGTACTGAATCACAATAATTACCAGCAAACTATTAGCCAACTTAGTGGGAGCAATCTATTGCAAAATCAACCCCAATGTTCCCAAATGCAACTTGAGACCATACCAACCTTCCAACCAAACCAACCCCAGGTTTCACTTCAAGAAAACCTTATTGCTAAGTCTAATCCATTGAACATGGAACACCAACTGATCAAAAGTAAATTACAGAATCAAATCTCCCCACTTGCTACCTCTTTTAGCCTTCAAAATCTTTGGCACTATGACAATGGAGACAACATATCGGGCTTATCAGTTCCCCAATCATCATCAGCTATGCAGTGTTTCTCTTCATCCAAGTTCAACTCTATATTCAACAATCTCTTGGGAAATCAGAATCTGTCTCACAACGAGGGGATCCCAAATTTCAATCTAACTTCACTGCTATCGTCCACAACTTCATCCAGCCCTTTGAATTCATCATCTTCCACGACATTTTTCAACGGAACCACAGAAGATGAAAGGGACACTTACGGCAGCAACATCTTAATGTATAACATTTCCAATGGCTTGAATGACTCTGGACTCTTGTGA 1125 0.4151 MTNSSTEKNGLKKGPWTPEEDQKLIDYIHKHGHGKWRTIPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLFKMGIDPVTHTPRLDVLQLASILNTSLFNSSPQFNHPFLSGIGRSVINPTHLLSLLSTLLSCQSRNNPDNVLNHNNYQQTISQLSGSNLLQNQPQCSQMQLETIPTFQPNQPQVSLQENLIAKSNPLNMEHQLIKSKLQNQISPLATSFSLQNLWHYDNGDNISGLSVPQSSSAMQCFSSSKFNSIFNNLLGNQNLSHNEGIPNFNLTSLLSSTTSSSPLNSSSSTTFFNGTTEDERDTYGSNILMYNISNGLNDSGLL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0904 374 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pvu5g0904 374 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 3 363 - -
Pvu5g0904 374 Gene3D - 10 66 - -
Pvu5g0904 374 SMART sant 12 62 IPR001005 -
Pvu5g0904 374 SMART sant 65 113 IPR001005 -
Pvu5g0904 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 363 - -
Pvu5g0904 374 Gene3D - 68 115 - -
Pvu5g0904 374 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pvu5g0904 374 CDD SANT 68 111 IPR001005 -
Pvu5g0904 374 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pvu5g0904 374 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pvu5g0904 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Pvu5g0904 374 CDD SANT 15 60 IPR001005 -
Pvu5g0904 374 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pvu5g0904 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0904 Pvu-Chr5 23463935 23465795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0904 7 374 MYB Transcription Factor Family AT4G21440 44.882 2.44e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g0904 Myb_DNA-binding 4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0904 K09422 - gmx:100820398 556.599